Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8535 | 5' | -44.4 | NC_002169.1 | + | 127002 | 0.66 | 0.999997 |
Target: 5'- gUCGGCGAAAGCAAGucgcgcgucauuuucGAUCAauUG-ACg- -3' miRNA: 3'- -AGCUGCUUUCGUUU---------------CUAGU--ACaUGau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11332 | 0.89 | 0.41236 |
Target: 5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACau---GAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 52825 | 0.9 | 0.348648 |
Target: 5'- uUCGAUGAAAGCAAAcAUCGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 53284 | 1.09 | 0.034914 |
Target: 5'- gUCGACGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 53494 | 0.68 | 0.999837 |
Target: 5'- aUCGACGggGGUguGGAGAUCGUa----- -3' miRNA: 3'- -AGCUGCuuUCG--UUUCUAGUAcaugau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 129825 | 0.71 | 0.997597 |
Target: 5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGCa- -3' miRNA: 3'- -AGCU-----GCUUuCGU--UUCUAGUACAUGau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 37283 | 0.72 | 0.996556 |
Target: 5'- aUCGACG-GAGCAGGGAUCgAUG-ACg- -3' miRNA: 3'- -AGCUGCuUUCGUUUCUAG-UACaUGau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 26639 | 0.72 | 0.994324 |
Target: 5'- cUCGGCGAGGGCAaAAGG--GUGUACg- -3' miRNA: 3'- -AGCUGCUUUCGU-UUCUagUACAUGau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 105481 | 0.77 | 0.938968 |
Target: 5'- -gGACGAAAGCAAAcAUUGUGUACUu -3' miRNA: 3'- agCUGCUUUCGUUUcUAGUACAUGAu -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 53060 | 0.89 | 0.422033 |
Target: 5'- -gGAUGAAAGCAAAGAUgAUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAgUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 10868 | 0.8 | 0.828519 |
Target: 5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCuUUCGUUUCUAGUaCAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 80180 | 0.76 | 0.948886 |
Target: 5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCAUGUGCa- -3' miRNA: 3'- -AGCUGCU------------UUCGUuuCUAGUACAUGau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 1863 | 0.66 | 0.99999 |
Target: 5'- cCGGCGgcGGCAAAGAUUAUc-GCUc -3' miRNA: 3'- aGCUGCuuUCGUUUCUAGUAcaUGAu -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 41928 | 0.82 | 0.75874 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUAUg- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUaCAUGau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 36267 | 0.67 | 0.999972 |
Target: 5'- aUCGACGcgauacuGCAAAGAcaGUGUGCg- -3' miRNA: 3'- -AGCUGCuuu----CGUUUCUagUACAUGau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 118888 | 0.75 | 0.972014 |
Target: 5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3' miRNA: 3'- -AGCUGCUUUCGuu--UCUAGU------------ACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 10679 | 0.83 | 0.693449 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGU-ACAUgau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 105376 | 0.9 | 0.357307 |
Target: 5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -AGCUGCU----------UUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 112785 | 0.67 | 0.999962 |
Target: 5'- aUCGACGAcGGCAAuaauaGGAUCAU-UGCc- -3' miRNA: 3'- -AGCUGCUuUCGUU-----UCUAGUAcAUGau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 32962 | 0.72 | 0.996556 |
Target: 5'- uUCGACGAAAcgacGCAAAucGGUCAgcGUACUAg -3' miRNA: 3'- -AGCUGCUUU----CGUUU--CUAGUa-CAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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