miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8535 5' -44.4 NC_002169.1 + 10551 0.77 0.927893
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 42222 0.78 0.902249
Target:  5'- -gGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAugau -5'
8535 5' -44.4 NC_002169.1 + 119482 0.79 0.887709
Target:  5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUAcAUGau -5'
8535 5' -44.4 NC_002169.1 + 52932 0.79 0.887709
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUaCAUGau -5'
8535 5' -44.4 NC_002169.1 + 10868 0.8 0.828519
Target:  5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUGCuUUCGUUUCUAGUaCAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 42291 0.81 0.809506
Target:  5'- -gGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACA---UGAu -5'
8535 5' -44.4 NC_002169.1 + 104869 0.81 0.769215
Target:  5'- -gGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUaCA--UGAU- -5'
8535 5' -44.4 NC_002169.1 + 41928 0.82 0.75874
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUaCAUGau -5'
8535 5' -44.4 NC_002169.1 + 10679 0.83 0.693449
Target:  5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGU-ACAUgau -5'
8535 5' -44.4 NC_002169.1 + 10969 0.88 0.441781
Target:  5'- uUCGACGAAA-CAAAGAUCAUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUcGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 53060 0.89 0.422033
Target:  5'- -gGAUGAAAGCAAAGAUgAUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAgUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 11332 0.89 0.41236
Target:  5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACau---GAU- -5'
8535 5' -44.4 NC_002169.1 + 105376 0.9 0.357307
Target:  5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUGCU----------UUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 52825 0.9 0.348648
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 11196 0.91 0.340138
Target:  5'- -gGACGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUaCAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 11474 0.91 0.315522
Target:  5'- gUCGAUGAAAGCAAAcAUCAUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105569 0.92 0.299872
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 119354 0.92 0.292275
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGcUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 11445 0.93 0.263391
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105441 0.93 0.256542
Target:  5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.