miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8537 3' -44.8 NC_002169.1 + 105690 0.66 0.999996
Target:  5'- ----aUACaCGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 122762 0.66 0.999996
Target:  5'- aCUAGUGCUCa---UUUGUUcggcgUCGUCg -3'
miRNA:   3'- aGAUCAUGAGcuagAAACGAa----AGCAG- -5'
8537 3' -44.8 NC_002169.1 + 108376 0.66 0.999994
Target:  5'- aCU-GUGC-CGAUU--UGUUUUCGUCg -3'
miRNA:   3'- aGAuCAUGaGCUAGaaACGAAAGCAG- -5'
8537 3' -44.8 NC_002169.1 + 32793 0.66 0.999992
Target:  5'- aCUAGUACgcugacCGAUUUgcGUcgUUUCGUCg -3'
miRNA:   3'- aGAUCAUGa-----GCUAGAaaCG--AAAGCAG- -5'
8537 3' -44.8 NC_002169.1 + 53091 0.66 0.999988
Target:  5'- ----aUACUCaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaucAUGAGcUAGAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 105600 0.66 0.999983
Target:  5'- ----aUACaCaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGaGcUAGAAACGAAAGCAG- -5'
8537 3' -44.8 NC_002169.1 + 105407 0.67 0.999976
Target:  5'- cUUUAaUACaCGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 41873 0.67 0.999968
Target:  5'- ----aUACaCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 104956 0.68 0.999818
Target:  5'- ----aUAgUCaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUgAGcUAGAAACGAAAGCAG- -5'
8537 3' -44.8 NC_002169.1 + 52978 0.69 0.999511
Target:  5'- uUUUAGUACaCcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGcUAGAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 52898 0.7 0.999048
Target:  5'- uUUUAGUACaUC-AUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AGAUCAUG-AGcUAGAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 52662 0.73 0.987794
Target:  5'- uUUUAGUACaCGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAgAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 105202 0.75 0.968351
Target:  5'- uUUUAaUACaCGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5'
8537 3' -44.8 NC_002169.1 + 53233 0.75 0.961187
Target:  5'- ----aUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGCAG- -5'
8537 3' -44.8 NC_002169.1 + 119325 0.76 0.957213
Target:  5'- ----aUAgaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUgaGCUAGAAACGAAAGCAG- -5'
8537 3' -44.8 NC_002169.1 + 41999 0.76 0.95297
Target:  5'- --cAGUACaCGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 11638 0.77 0.933219
Target:  5'- uUCUAGUACaUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAgAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 71637 0.77 0.92757
Target:  5'- --cAGUACaCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGcAG- -5'
8537 3' -44.8 NC_002169.1 + 11366 0.77 0.915415
Target:  5'- uUUUAaUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5'
8537 3' -44.8 NC_002169.1 + 104769 0.77 0.915415
Target:  5'- ----aUACaUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.