Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8537 | 3' | -44.8 | NC_002169.1 | + | 104769 | 0.77 | 0.915415 |
Target: 5'- ----aUACaUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 53123 | 0.87 | 0.465939 |
Target: 5'- --cAGUACaUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 53040 | 0.86 | 0.539898 |
Target: 5'- uUCUAGUACaUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 104956 | 0.85 | 0.561795 |
Target: 5'- --cAGUACaUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 105091 | 0.82 | 0.717424 |
Target: 5'- uUUUAGUACaCGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 42255 | 0.8 | 0.819821 |
Target: 5'- uUUUAGUACaUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 104833 | 0.8 | 0.819821 |
Target: 5'- uUUUAGUACaUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 11173 | 0.8 | 0.838209 |
Target: 5'- ----aUGCaCGAUCUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 42188 | 0.78 | 0.908909 |
Target: 5'- -gUAGUACaUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- agAUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 105501 | 0.88 | 0.455795 |
Target: 5'- --cAGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 52784 | 0.88 | 0.455795 |
Target: 5'- --cGGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 119602 | 0.9 | 0.370324 |
Target: 5'- --cAGUACaCGAUCUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 11034 | 1.11 | 0.024541 |
Target: 5'- cUCUAGUACUCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGAGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 11568 | 1 | 0.101659 |
Target: 5'- cUCUAGUACUCGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGAGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 119418 | 0.93 | 0.253913 |
Target: 5'- uUUUAGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 120037 | 0.93 | 0.253913 |
Target: 5'- uUUUAGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 10935 | 0.92 | 0.281698 |
Target: 5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 10815 | 0.91 | 0.304081 |
Target: 5'- cUCUAGUACaCGAUgUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUCAUGaGCUAgAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 11442 | 0.91 | 0.327806 |
Target: 5'- -aUAGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 41772 | 0.9 | 0.352874 |
Target: 5'- ----aUACUCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGAGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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