Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8537 | 3' | -44.8 | NC_002169.1 | + | 105690 | 0.66 | 0.999996 |
Target: 5'- ----aUACaCGAUCUUUGCUUUC-UCg -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 42192 | 0.91 | 0.327807 |
Target: 5'- -aUAGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 119796 | 0.92 | 0.281698 |
Target: 5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 42065 | 1.06 | 0.050302 |
Target: 5'- aUUUAGUACUCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGAGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 104956 | 0.68 | 0.999818 |
Target: 5'- ----aUAgUCaAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUgAGcUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 52978 | 0.69 | 0.999511 |
Target: 5'- uUUUAGUACaCcAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGcUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 11638 | 0.77 | 0.933219 |
Target: 5'- uUCUAGUACaUGAUgUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAgAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 11366 | 0.77 | 0.915415 |
Target: 5'- uUUUAaUACaUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 11132 | 0.79 | 0.847071 |
Target: 5'- gUUUAaUACaUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 105026 | 0.9 | 0.370324 |
Target: 5'- ----cUACUCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGAGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 11012 | 0.8 | 0.819821 |
Target: 5'- gUUUAGUACaUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 119518 | 0.79 | 0.880098 |
Target: 5'- uUUUAGUACaCGAUCUUUGCUUUUaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 108376 | 0.66 | 0.999994 |
Target: 5'- aCU-GUGC-CGAUU--UGUUUUCGUCg -3' miRNA: 3'- aGAuCAUGaGCUAGaaACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 119616 | 0.8 | 0.819821 |
Target: 5'- uUUUAGUACaUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 53091 | 0.66 | 0.999988 |
Target: 5'- ----aUACUCaAUCUUUGCUUUCaUCg -3' miRNA: 3'- agaucAUGAGcUAGAAACGAAAGcAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 11761 | 0.78 | 0.908909 |
Target: 5'- ----aUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 53315 | 0.85 | 0.561795 |
Target: 5'- --cAGUACaUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 105289 | 0.92 | 0.296472 |
Target: 5'- cUCUAGUACaUGAUCUUUGCUUUCGUa -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGCAg -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 105600 | 0.66 | 0.999983 |
Target: 5'- ----aUACaCaAUCUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGaGcUAGAAACGAAAGCAG- -5' |
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8537 | 3' | -44.8 | NC_002169.1 | + | 53233 | 0.75 | 0.961187 |
Target: 5'- ----aUACaUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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