miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8537 5' -44.4 NC_002169.1 + 10741 1.09 0.031888
Target:  5'- uUCGACGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11068 1.09 0.031888
Target:  5'- uUCGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 53284 1.09 0.034914
Target:  5'- gUCGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 105236 1.09 0.035984
Target:  5'- gUCGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11315 1.08 0.038222
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 119762 1.08 0.039391
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 104997 1.05 0.054801
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 42419 1.05 0.054801
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 10849 1.05 0.054801
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 119452 1.05 0.054801
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 53204 1.05 0.054801
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 42350 1.04 0.061745
Target:  5'- cUCGAUGAAAGCAAAGAUCAUGUACUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 105255 1.04 0.061745
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 71797 1.04 0.069538
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 104927 1.04 0.069538
Target:  5'- gUCGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 120071 1.03 0.078272
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 71670 1.02 0.085501
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 52698 1.02 0.085501
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 53156 1.01 0.093364
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 105115 1.01 0.093364
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.