miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8537 5' -44.4 NC_002169.1 + 1863 0.66 0.99999
Target:  5'- cCGGCGgcGGCAAAGAUUAUc-GCUc -3'
miRNA:   3'- aGCUGCuuUCGUUUCUAGUAcaUGAu -5'
8537 5' -44.4 NC_002169.1 + 4197 0.67 0.999986
Target:  5'- gCGGCGGAGGCGAAGGacuuggugaUgGUGUAa-- -3'
miRNA:   3'- aGCUGCUUUCGUUUCU---------AgUACAUgau -5'
8537 5' -44.4 NC_002169.1 + 10551 0.77 0.927893
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 10679 0.83 0.693449
Target:  5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGU-ACAUgau -5'
8537 5' -44.4 NC_002169.1 + 10741 1.09 0.031888
Target:  5'- uUCGACGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 10849 1.05 0.054801
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 10868 0.8 0.828519
Target:  5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUGCuUUCGUUUCUAGUaCAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 10969 0.88 0.441781
Target:  5'- uUCGACGAAA-CAAAGAUCAUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUcGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 10978 0.94 0.224467
Target:  5'- cUCGACGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11068 1.09 0.031888
Target:  5'- uUCGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11096 0.94 0.236869
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGau -5'
8537 5' -44.4 NC_002169.1 + 11196 0.91 0.340138
Target:  5'- -gGACGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUaCAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11204 0.97 0.165787
Target:  5'- -gGACGAAAGCAAAGAUCAUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11315 1.08 0.038222
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11332 0.89 0.41236
Target:  5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACau---GAU- -5'
8537 5' -44.4 NC_002169.1 + 11445 0.93 0.263391
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11474 0.91 0.315522
Target:  5'- gUCGAUGAAAGCAAAcAUCAUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11602 1.01 0.101909
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11604 0.95 0.195863
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 11732 0.94 0.230598
Target:  5'- gUCGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUaCAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.