miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8537 5' -44.4 NC_002169.1 + 129825 0.71 0.997597
Target:  5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-----GCUUuCGU--UUCUAGUACAUGau -5'
8537 5' -44.4 NC_002169.1 + 127910 0.66 0.999997
Target:  5'- gCGGCGAagAAGCAuugaaGGGAUCGUGgugaUGCg- -3'
miRNA:   3'- aGCUGCU--UUCGU-----UUCUAGUAC----AUGau -5'
8537 5' -44.4 NC_002169.1 + 127002 0.66 0.999997
Target:  5'- gUCGGCGAAAGCAAGucgcgcgucauuuucGAUCAauUG-ACg- -3'
miRNA:   3'- -AGCUGCUUUCGUUU---------------CUAGU--ACaUGau -5'
8537 5' -44.4 NC_002169.1 + 120199 1.01 0.096134
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 120071 1.03 0.078272
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 119762 1.08 0.039391
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 119635 0.94 0.236869
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGau -5'
8537 5' -44.4 NC_002169.1 + 119580 1.01 0.096134
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 119482 0.79 0.887709
Target:  5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUAcAUGau -5'
8537 5' -44.4 NC_002169.1 + 119452 1.05 0.054801
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 119354 0.92 0.292275
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGcUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 118888 0.75 0.972014
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUGCUUUCGuu--UCUAGU------------ACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 112785 0.67 0.999962
Target:  5'- aUCGACGAcGGCAAuaauaGGAUCAU-UGCc- -3'
miRNA:   3'- -AGCUGCUuUCGUU-----UCUAGUAcAUGau -5'
8537 5' -44.4 NC_002169.1 + 105660 1 0.111187
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUGu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 105569 0.92 0.299872
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 105532 0.99 0.132157
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 105481 0.77 0.938968
Target:  5'- -gGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGUACAUGAu -5'
8537 5' -44.4 NC_002169.1 + 105441 0.93 0.256542
Target:  5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGau -5'
8537 5' -44.4 NC_002169.1 + 105376 0.9 0.357307
Target:  5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUGCU----------UUCGUUUCUAGUACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 105355 0.68 0.999948
Target:  5'- -gGAUGAAAGCAAAcAUgAUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAgUACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.