Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8537 | 5' | -44.4 | NC_002169.1 | + | 10551 | 0.77 | 0.927893 |
Target: 5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUcUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 42222 | 0.78 | 0.902249 |
Target: 5'- -gGACGAAAGCAAAGAUUGUGUu--- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAugau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 119482 | 0.79 | 0.887709 |
Target: 5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUAcAUGau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 52932 | 0.79 | 0.887709 |
Target: 5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUaCAUGau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 10868 | 0.8 | 0.828519 |
Target: 5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCuUUCGUUUCUAGUaCAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 42291 | 0.81 | 0.809506 |
Target: 5'- -gGACGAAAGCAAAGAUUGUGUuugACUu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACA---UGAu -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 104869 | 0.81 | 0.769215 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUagGCUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUaCA--UGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 41928 | 0.82 | 0.75874 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUAUg- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUaCAUGau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 10679 | 0.83 | 0.693449 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGU-ACAUgau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 10969 | 0.88 | 0.441781 |
Target: 5'- uUCGACGAAA-CAAAGAUCAUGUAUUAa -3' miRNA: 3'- -AGCUGCUUUcGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 53060 | 0.89 | 0.422033 |
Target: 5'- -gGAUGAAAGCAAAGAUgAUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAgUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 11332 | 0.89 | 0.41236 |
Target: 5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACau---GAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 105376 | 0.9 | 0.357307 |
Target: 5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -AGCUGCU----------UUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 52825 | 0.9 | 0.348648 |
Target: 5'- uUCGAUGAAAGCAAAcAUCGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 11196 | 0.91 | 0.340138 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUaCAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 11474 | 0.91 | 0.315522 |
Target: 5'- gUCGAUGAAAGCAAAcAUCAUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 105569 | 0.92 | 0.299872 |
Target: 5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 119354 | 0.92 | 0.292275 |
Target: 5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -AGCUGcUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 11445 | 0.93 | 0.263391 |
Target: 5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 105441 | 0.93 | 0.256542 |
Target: 5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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