Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8537 | 5' | -44.4 | NC_002169.1 | + | 11096 | 0.94 | 0.236869 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 119635 | 0.94 | 0.236869 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 52942 | 0.94 | 0.236869 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 11732 | 0.94 | 0.230598 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUaCAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 10978 | 0.94 | 0.224467 |
Target: 5'- cUCGACGAAAGCAAAcAUCGUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 42031 | 0.95 | 0.201317 |
Target: 5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 11604 | 0.95 | 0.195863 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 105125 | 0.96 | 0.185341 |
Target: 5'- cUCuACGAAAGCAAAGAUCAUGUACUAg -3' miRNA: 3'- -AGcUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 53076 | 0.96 | 0.18027 |
Target: 5'- -gGACGAAAGCAAAGAUCAUGUAUUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 52815 | 0.97 | 0.170495 |
Target: 5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAgUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 42158 | 0.97 | 0.165787 |
Target: 5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 11204 | 0.97 | 0.165787 |
Target: 5'- -gGACGAAAGCAAAGAUCAUGUAUUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 105532 | 0.99 | 0.132157 |
Target: 5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 105660 | 1 | 0.111187 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUGu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 104987 | 1 | 0.10801 |
Target: 5'- uUCGAUGAAAGCAAAGAUCAUGUGCg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGau -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 11602 | 1.01 | 0.101909 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 42032 | 1.01 | 0.101909 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 120199 | 1.01 | 0.096134 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 119580 | 1.01 | 0.096134 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8537 | 5' | -44.4 | NC_002169.1 | + | 53156 | 1.01 | 0.093364 |
Target: 5'- -gGACGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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