miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8538 5' -42.9 NC_002169.1 + 1188 0.68 0.99999
Target:  5'- cGGGCGAGAGCGGAGuuUUAcGUuUUAa -3'
miRNA:   3'- aCCUGCUUUCGUUUCu-AGUaCAuAAU- -5'
8538 5' -42.9 NC_002169.1 + 10677 0.77 0.966858
Target:  5'- -cGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGU-ACAUaau -5'
8538 5' -42.9 NC_002169.1 + 10743 0.91 0.405971
Target:  5'- -cGACGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 10851 0.87 0.599462
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 10870 0.81 0.880409
Target:  5'- uUGGACG-AAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGU-------------ACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 10971 0.82 0.819341
Target:  5'- -cGACGAAA-CAAAGAUCAUGUAUUAa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 10976 0.76 0.983606
Target:  5'- -cGACGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 11070 0.91 0.405971
Target:  5'- -cGACGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 11098 1.01 0.134387
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 11198 0.9 0.456143
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUaau -5'
8538 5' -42.9 NC_002169.1 + 11202 1.09 0.044311
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 11317 0.9 0.445838
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 11330 0.83 0.789394
Target:  5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACaUAAu -5'
8538 5' -42.9 NC_002169.1 + 11443 0.87 0.588007
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 11476 0.72 0.998291
Target:  5'- -cGAUGAAAGCAAAcAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 11602 1.08 0.053219
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 11604 1.01 0.134387
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 11730 0.77 0.969932
Target:  5'- -cGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGU-------------ACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 14374 0.68 0.999995
Target:  5'- gUGaGACGcGAAGaCAGGGA-CAUGUAUUAu -3'
miRNA:   3'- -AC-CUGC-UUUC-GUUUCUaGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 29549 0.68 0.999993
Target:  5'- gUGGACGAGAaCGAGGAcgaGUGUAa-- -3'
miRNA:   3'- -ACCUGCUUUcGUUUCUag-UACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.