miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8538 5' -42.9 NC_002169.1 + 104989 0.86 0.633966
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUGc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 104867 0.91 0.425627
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAg-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUaau -5'
8538 5' -42.9 NC_002169.1 + 11317 0.9 0.445838
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 105238 0.9 0.445838
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 42220 0.9 0.456143
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAuaau -5'
8538 5' -42.9 NC_002169.1 + 42289 0.9 0.456143
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAuaau -5'
8538 5' -42.9 NC_002169.1 + 10851 0.87 0.599462
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 119454 0.87 0.599462
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 105443 0.87 0.610947
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUAau -5'
8538 5' -42.9 NC_002169.1 + 11070 0.91 0.405971
Target:  5'- -cGACGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 10743 0.91 0.405971
Target:  5'- -cGACGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 105534 0.93 0.333323
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 53074 1.09 0.048566
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 11602 1.08 0.053219
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 52696 1.02 0.119559
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 53154 1.02 0.119559
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 71668 1.02 0.119559
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 42030 1.01 0.134387
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 119633 1.01 0.134387
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 120073 0.97 0.206101
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.