miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 5' -45.8 NC_002169.1 + 11474 0.79 0.794696
Target:  5'- gUCGAUGAAAGCAAAcAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105481 0.8 0.764445
Target:  5'- -gGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCACAUGAu -5'
8539 5' -45.8 NC_002169.1 + 119482 0.8 0.754068
Target:  5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCAcAUGau -5'
8539 5' -45.8 NC_002169.1 + 10551 0.8 0.743564
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 52932 0.81 0.732944
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCaCAUGau -5'
8539 5' -45.8 NC_002169.1 + 10868 0.81 0.732944
Target:  5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUGCuUUCGUUUCUAGCaCAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 42222 0.81 0.700511
Target:  5'- -gGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAugau -5'
8539 5' -45.8 NC_002169.1 + 104869 0.82 0.667464
Target:  5'- -gGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCA--UGAU- -5'
8539 5' -45.8 NC_002169.1 + 41928 0.82 0.656365
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUGau -5'
8539 5' -45.8 NC_002169.1 + 42291 0.84 0.578612
Target:  5'- -gGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACA---UGAu -5'
8539 5' -45.8 NC_002169.1 + 105125 0.84 0.578612
Target:  5'- cUCuACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -AGcUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 53076 0.84 0.567612
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10679 0.84 0.534965
Target:  5'- gUCGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCA-CAUgau -5'
8539 5' -45.8 NC_002169.1 + 11204 0.84 0.534965
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 104987 0.88 0.385047
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUGCg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGau -5'
8539 5' -45.8 NC_002169.1 + 53156 0.89 0.341582
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105115 0.89 0.341582
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 71670 0.89 0.317255
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 52698 0.89 0.317255
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11332 0.9 0.294256
Target:  5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACau---GAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.