miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 5' -45.8 NC_002169.1 + 11445 0.96 0.150838
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10978 0.95 0.155095
Target:  5'- cUCGACGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 52942 0.95 0.163936
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 11096 0.95 0.163936
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 119635 0.95 0.163936
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 11732 0.94 0.182985
Target:  5'- gUCGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCaCAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119354 0.93 0.203966
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGcUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105569 0.93 0.209527
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 53204 0.93 0.215219
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119452 0.93 0.215219
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 42419 0.93 0.215219
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 104997 0.93 0.215219
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10849 0.93 0.215219
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 42350 0.92 0.239323
Target:  5'- cUCGAUGAAAGCAAAGAUCaUGUACUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 52825 0.92 0.245692
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105376 0.91 0.2522
Target:  5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUGCU----------UUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 104927 0.91 0.265642
Target:  5'- gUCGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11196 0.91 0.272578
Target:  5'- -gGACGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11332 0.9 0.294256
Target:  5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACau---GAU- -5'
8539 5' -45.8 NC_002169.1 + 71670 0.89 0.317255
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.