miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 5' -45.8 NC_002169.1 + 105236 1.09 0.024717
Target:  5'- gUCGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11315 1.09 0.02624
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119762 1.08 0.027035
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105255 1.05 0.042241
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 71797 1.04 0.047547
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 120071 1.03 0.053501
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119580 1.02 0.065705
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 120199 1.02 0.065705
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11602 1.01 0.06966
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 42032 1.01 0.06966
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105660 1.01 0.076024
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUGu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105532 1 0.090461
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 42158 0.98 0.113788
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 52815 0.97 0.131111
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAgCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11068 0.97 0.131111
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10741 0.97 0.131111
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11604 0.96 0.134856
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 42031 0.96 0.138699
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 53284 0.96 0.142642
Target:  5'- gUCGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105441 0.96 0.146688
Target:  5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.