miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 5' -45.8 NC_002169.1 + 42291 0.84 0.578612
Target:  5'- -gGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACA---UGAu -5'
8539 5' -45.8 NC_002169.1 + 10849 0.93 0.215219
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119452 0.93 0.215219
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 52698 0.89 0.317255
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 71670 0.89 0.317255
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 53156 0.89 0.341582
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 104987 0.88 0.385047
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUGCg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGau -5'
8539 5' -45.8 NC_002169.1 + 11204 0.84 0.534965
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 53076 0.84 0.567612
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119354 0.93 0.203966
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGcUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119635 0.95 0.163936
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 105441 0.96 0.146688
Target:  5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 11315 1.09 0.02624
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 120071 1.03 0.053501
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 42032 1.01 0.06966
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105532 1 0.090461
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10741 0.97 0.131111
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11068 0.97 0.131111
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 52815 0.97 0.131111
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAgCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11604 0.96 0.134856
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.