Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8539 | 5' | -45.8 | NC_002169.1 | + | 70186 | 0.66 | 0.999956 |
Target: 5'- gUCGACGAGGGCAAcaaGUCG-GUGg-- -3' miRNA: 3'- -AGCUGCUUUCGUUuc-UAGCaCAUgau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 11196 | 0.91 | 0.272578 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCaCAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 105376 | 0.91 | 0.2522 |
Target: 5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -AGCUGCU----------UUCGUUUCUAGCACAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 105255 | 1.05 | 0.042241 |
Target: 5'- uUCGAUGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 53494 | 0.7 | 0.99582 |
Target: 5'- aUCGACGggGGUguGGAGAUCGUa----- -3' miRNA: 3'- -AGCUGCuuUCG--UUUCUAGCAcaugau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 26639 | 0.72 | 0.986422 |
Target: 5'- cUCGGCGAGGGCAAA-AggGUGUACg- -3' miRNA: 3'- -AGCUGCUUUCGUUUcUagCACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 129825 | 0.73 | 0.97783 |
Target: 5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGCa- -3' miRNA: 3'- -AGCU-----GCUUuCGU--UUCUAGCACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 118888 | 0.75 | 0.945011 |
Target: 5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3' miRNA: 3'- -AGCUGCUUUCGuu--UCUAGC------------ACAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 119482 | 0.8 | 0.754068 |
Target: 5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCAcAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 11332 | 0.9 | 0.294256 |
Target: 5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACau---GAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 10868 | 0.81 | 0.732944 |
Target: 5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCuUUCGUUUCUAGCaCAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 105481 | 0.8 | 0.764445 |
Target: 5'- -gGACGAAAGCAAAcAUUGUGUACUu -3' miRNA: 3'- agCUGCUUUCGUUUcUAGCACAUGAu -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 32962 | 0.66 | 0.999941 |
Target: 5'- uUCGACGAAAcgacGCAAAucGGUCaGcGUACUAg -3' miRNA: 3'- -AGCUGCUUU----CGUUU--CUAG-CaCAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 10679 | 0.84 | 0.534965 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGUuGUGg-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCA-CAUgau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 36267 | 0.67 | 0.999862 |
Target: 5'- aUCGACGcgauacuGCAAAGAcaGUGUGCg- -3' miRNA: 3'- -AGCUGCuuu----CGUUUCUagCACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 53060 | 0.78 | 0.832549 |
Target: 5'- -gGAUGAAAGCAAAGAUgaUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAgcACAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 105115 | 0.89 | 0.341582 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 104927 | 0.91 | 0.265642 |
Target: 5'- gUCGACGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 37425 | 0.67 | 0.999859 |
Target: 5'- cCGACGAAGGCcucaccaucgucgGccGAUCGcUGUACa- -3' miRNA: 3'- aGCUGCUUUCG-------------UuuCUAGC-ACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 37283 | 0.72 | 0.982521 |
Target: 5'- aUCGACG-GAGCAGGGAUCGaUG-ACg- -3' miRNA: 3'- -AGCUGCuUUCGUUUCUAGC-ACaUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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