miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 5' -45.8 NC_002169.1 + 4197 0.68 0.99962
Target:  5'- gCGGCGGAGGCGAAGGacuuggugaUgGUGUAa-- -3'
miRNA:   3'- aGCUGCUUUCGUUUCU---------AgCACAUgau -5'
8539 5' -45.8 NC_002169.1 + 10551 0.8 0.743564
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10679 0.84 0.534965
Target:  5'- gUCGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCA-CAUgau -5'
8539 5' -45.8 NC_002169.1 + 10741 0.97 0.131111
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10849 0.93 0.215219
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10868 0.81 0.732944
Target:  5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUGCuUUCGUUUCUAGCaCAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10969 0.76 0.910977
Target:  5'- uUCGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUcGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 10978 0.95 0.155095
Target:  5'- cUCGACGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11068 0.97 0.131111
Target:  5'- uUCGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11096 0.95 0.163936
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 11196 0.91 0.272578
Target:  5'- -gGACGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11204 0.84 0.534965
Target:  5'- -gGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11315 1.09 0.02624
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11332 0.9 0.294256
Target:  5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACau---GAU- -5'
8539 5' -45.8 NC_002169.1 + 11445 0.96 0.150838
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11474 0.79 0.794696
Target:  5'- gUCGAUGAAAGCAAAcAUCaUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11602 1.01 0.06966
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11604 0.96 0.134856
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 11732 0.94 0.182985
Target:  5'- gUCGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCaCAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 26639 0.72 0.986422
Target:  5'- cUCGGCGAGGGCAAA-AggGUGUACg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUagCACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.