miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 5' -45.8 NC_002169.1 + 129825 0.73 0.97783
Target:  5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-----GCUUuCGU--UUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 127910 0.68 0.99962
Target:  5'- gCGGCGAagAAGCAuugaaGGGAUCGUGgugaUGCg- -3'
miRNA:   3'- aGCUGCU--UUCGU-----UUCUAGCAC----AUGau -5'
8539 5' -45.8 NC_002169.1 + 120199 1.02 0.065705
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 120071 1.03 0.053501
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119762 1.08 0.027035
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119635 0.95 0.163936
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 119580 1.02 0.065705
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119482 0.8 0.754068
Target:  5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCAcAUGau -5'
8539 5' -45.8 NC_002169.1 + 119452 0.93 0.215219
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 119354 0.93 0.203966
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGcUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 118888 0.75 0.945011
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUGCUUUCGuu--UCUAGC------------ACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105660 1.01 0.076024
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUGu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105569 0.93 0.209527
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105532 1 0.090461
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105481 0.8 0.764445
Target:  5'- -gGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCACAUGAu -5'
8539 5' -45.8 NC_002169.1 + 105441 0.96 0.146688
Target:  5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGau -5'
8539 5' -45.8 NC_002169.1 + 105376 0.91 0.2522
Target:  5'- gUCGACGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUGCU----------UUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105255 1.05 0.042241
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105236 1.09 0.024717
Target:  5'- gUCGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5'
8539 5' -45.8 NC_002169.1 + 105125 0.84 0.578612
Target:  5'- cUCuACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -AGcUGCUUUCGUUUCUAGcACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.