miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8540 3' -43.4 NC_002169.1 + 11568 1.14 0.024096
Target:  5'- cUCUAGUACUCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10707 1.11 0.035809
Target:  5'- cUCUAGUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11034 1.11 0.035809
Target:  5'- cUCUAGUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 42065 1.05 0.073755
Target:  5'- aUUUAGUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 53040 0.99 0.16655
Target:  5'- uUCUAGUACaUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11232 0.97 0.191566
Target:  5'- cUCUAGUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 71831 0.96 0.238427
Target:  5'- uUCUAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 52859 0.96 0.238427
Target:  5'- uUCUAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105091 0.95 0.258335
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105400 0.94 0.294501
Target:  5'- cUUUAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 119616 0.93 0.334492
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11012 0.93 0.334492
Target:  5'- gUUUAGUACaUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 42255 0.93 0.334493
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 104833 0.93 0.334493
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 120037 0.92 0.360331
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 119418 0.92 0.360331
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11477 0.92 0.369248
Target:  5'- -aUAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10904 0.92 0.369248
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 119796 0.91 0.396892
Target:  5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10935 0.91 0.396892
Target:  5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.