miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8540 3' -43.4 NC_002169.1 + 10524 0.75 0.984143
Target:  5'- --------aCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- agaucaugaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10707 1.11 0.035809
Target:  5'- cUCUAGUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10713 0.71 0.999544
Target:  5'- uUUUAGUACaCaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AGAUCAUGaGcUAgAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10815 0.9 0.425832
Target:  5'- cUCUAGUACaCGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAgAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10904 0.92 0.369248
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10935 0.91 0.396892
Target:  5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11012 0.93 0.334492
Target:  5'- gUUUAGUACaUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11034 1.11 0.035809
Target:  5'- cUCUAGUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11132 0.78 0.9476
Target:  5'- gUUUAaUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11173 0.78 0.942675
Target:  5'- ----aUGCaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11232 0.97 0.191566
Target:  5'- cUCUAGUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11281 0.68 0.99999
Target:  5'- aUUUAaUACaCaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUcAUGaGcUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11366 0.76 0.979667
Target:  5'- uUUUAaUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11442 0.9 0.455992
Target:  5'- -aUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11477 0.92 0.369248
Target:  5'- -aUAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11568 1.14 0.024096
Target:  5'- cUCUAGUACUCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11638 0.89 0.476724
Target:  5'- uUCUAGUACaUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAgAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11761 0.76 0.977106
Target:  5'- ----aUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 41772 0.89 0.487264
Target:  5'- ----aUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 41873 0.79 0.920042
Target:  5'- ----aUACaCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.