miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8541 3' -50.7 NC_002169.1 + 19181 0.66 0.992898
Target:  5'- aUAGUcGGUcaGAuCGACGGCGUCGaCGg -3'
miRNA:   3'- -GUUAaCCAcaCU-GCUGUCGCAGCaGC- -5'
8541 3' -50.7 NC_002169.1 + 115143 0.67 0.989302
Target:  5'- gGAUcGGUGUGuccugcucuCGACAGCGUUcUCa -3'
miRNA:   3'- gUUAaCCACACu--------GCUGUCGCAGcAGc -5'
8541 3' -50.7 NC_002169.1 + 4179 0.67 0.98783
Target:  5'- cCGGUUGcGgugGUGACGGCGGCGgaggCGa-- -3'
miRNA:   3'- -GUUAAC-Ca--CACUGCUGUCGCa---GCagc -5'
8541 3' -50.7 NC_002169.1 + 1549 0.67 0.987675
Target:  5'- -cAUUGGUggcgguggcggcgGUGGCGGCGGCG-CGUa- -3'
miRNA:   3'- guUAACCA-------------CACUGCUGUCGCaGCAgc -5'
8541 3' -50.7 NC_002169.1 + 124924 0.67 0.986206
Target:  5'- ----cGGUGggGGCGGCGGCGgCGgCGg -3'
miRNA:   3'- guuaaCCACa-CUGCUGUCGCaGCaGC- -5'
8541 3' -50.7 NC_002169.1 + 127955 0.67 0.984422
Target:  5'- ----cGGcgGcGGCGGCGGCGUCGUa- -3'
miRNA:   3'- guuaaCCa-CaCUGCUGUCGCAGCAgc -5'
8541 3' -50.7 NC_002169.1 + 66918 0.67 0.982467
Target:  5'- -cGUUGGUcucGACGACGGCGcUGUCc -3'
miRNA:   3'- guUAACCAca-CUGCUGUCGCaGCAGc -5'
8541 3' -50.7 NC_002169.1 + 93366 0.67 0.982262
Target:  5'- ---aUGaGUGUgauugacGACGACGGCaUCGUCGu -3'
miRNA:   3'- guuaAC-CACA-------CUGCUGUCGcAGCAGC- -5'
8541 3' -50.7 NC_002169.1 + 57904 0.68 0.975493
Target:  5'- --------uUGuCGACGGCGUCGUCGg -3'
miRNA:   3'- guuaaccacACuGCUGUCGCAGCAGC- -5'
8541 3' -50.7 NC_002169.1 + 3202 0.68 0.975493
Target:  5'- ---gUGGuUGUGAUGAUu-CGUCGUCGu -3'
miRNA:   3'- guuaACC-ACACUGCUGucGCAGCAGC- -5'
8541 3' -50.7 NC_002169.1 + 108718 0.68 0.97277
Target:  5'- ---gUGGaaUGUGGCGGCGGCGgCGgCGa -3'
miRNA:   3'- guuaACC--ACACUGCUGUCGCaGCaGC- -5'
8541 3' -50.7 NC_002169.1 + 85763 0.68 0.969835
Target:  5'- aAAUUGGcc-GAUGGCAuCGUCGUCGa -3'
miRNA:   3'- gUUAACCacaCUGCUGUcGCAGCAGC- -5'
8541 3' -50.7 NC_002169.1 + 117820 0.69 0.966681
Target:  5'- -uGUUGGcUGcGGCGGCGGCgGUUGUCu -3'
miRNA:   3'- guUAACC-ACaCUGCUGUCG-CAGCAGc -5'
8541 3' -50.7 NC_002169.1 + 107274 0.69 0.951748
Target:  5'- ---------aGAUGACGGCGUCGUCGc -3'
miRNA:   3'- guuaaccacaCUGCUGUCGCAGCAGC- -5'
8541 3' -50.7 NC_002169.1 + 13157 0.7 0.937978
Target:  5'- -uGUUGGcgagcaUGUGcaguuCGugAGCGUCGUCGc -3'
miRNA:   3'- guUAACC------ACACu----GCugUCGCAGCAGC- -5'
8541 3' -50.7 NC_002169.1 + 96895 0.7 0.932882
Target:  5'- ---aUGGgcaucacCGGCAGCGUCGUCGa -3'
miRNA:   3'- guuaACCacacu--GCUGUCGCAGCAGC- -5'
8541 3' -50.7 NC_002169.1 + 107709 0.71 0.92192
Target:  5'- --uUUGGUGgguuUGGCGAUAGCGacggcaUCGUCa -3'
miRNA:   3'- guuAACCAC----ACUGCUGUCGC------AGCAGc -5'
8541 3' -50.7 NC_002169.1 + 30358 0.71 0.90356
Target:  5'- ---gUGGUgGUGGguauuuUGACGGUGUCGUCGu -3'
miRNA:   3'- guuaACCA-CACU------GCUGUCGCAGCAGC- -5'
8541 3' -50.7 NC_002169.1 + 91708 0.74 0.780859
Target:  5'- --------aUGGCGACGGCGUCGUCGu -3'
miRNA:   3'- guuaaccacACUGCUGUCGCAGCAGC- -5'
8541 3' -50.7 NC_002169.1 + 93191 0.75 0.751503
Target:  5'- ---aUGGUgGUGACGACGauGcCGUCGUCGu -3'
miRNA:   3'- guuaACCA-CACUGCUGU--C-GCAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.