miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8545 3' -55.3 NC_002169.1 + 22520 0.69 0.814926
Target:  5'- uUUCCGGCcGGCaCGUGCUG-GCCGAgCa -3'
miRNA:   3'- -AGGGCUGcUUG-GUAUGACgCGGCUgG- -5'
8545 3' -55.3 NC_002169.1 + 26102 0.69 0.814926
Target:  5'- -aCgGcACGGACgAUGCgUGCGCCGGCg -3'
miRNA:   3'- agGgC-UGCUUGgUAUG-ACGCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 1089 0.69 0.806163
Target:  5'- cUCCCGAUGGAguugcccgauuCCAUuaccacGCUGaCGgCGGCCa -3'
miRNA:   3'- -AGGGCUGCUU-----------GGUA------UGAC-GCgGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 110339 0.69 0.797244
Target:  5'- aCuuGACGuacACCGUAUUGuUGCUGACUg -3'
miRNA:   3'- aGggCUGCu--UGGUAUGAC-GCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 78032 0.69 0.796344
Target:  5'- gCCCGACGAacgcuucgacgcgACCucgaAUACgugcGUGCCGAUCc -3'
miRNA:   3'- aGGGCUGCU-------------UGG----UAUGa---CGCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 55975 0.69 0.788176
Target:  5'- -aCCGGCGuuauGCCGUGC-GUGUCGGCa -3'
miRNA:   3'- agGGCUGCu---UGGUAUGaCGCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 6719 0.71 0.711338
Target:  5'- cUCCUGAUGaAACUAcUAUUGcCGCCGACg -3'
miRNA:   3'- -AGGGCUGC-UUGGU-AUGAC-GCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 37581 0.71 0.701334
Target:  5'- aUCUCGACGAACUGacucUAUUGCGaUCGACa -3'
miRNA:   3'- -AGGGCUGCUUGGU----AUGACGC-GGCUGg -5'
8545 3' -55.3 NC_002169.1 + 26209 0.71 0.701334
Target:  5'- gUCgCCGGCGAagGCUuuuacaAUUGCGCCGACg -3'
miRNA:   3'- -AG-GGCUGCU--UGGua----UGACGCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 45820 0.71 0.691272
Target:  5'- -aCCGGCGAuuucACCAgauUGCU-CGCCGACUc -3'
miRNA:   3'- agGGCUGCU----UGGU---AUGAcGCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 42777 0.71 0.691272
Target:  5'- aUCCUGcCGcaAGCCGUGCUaGCGCuCGACa -3'
miRNA:   3'- -AGGGCuGC--UUGGUAUGA-CGCG-GCUGg -5'
8545 3' -55.3 NC_002169.1 + 47185 0.71 0.67101
Target:  5'- gCCCaACGGAUUAUAgUGUucGCCGGCCg -3'
miRNA:   3'- aGGGcUGCUUGGUAUgACG--CGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 73632 0.72 0.6404
Target:  5'- --aCGAUGAG-CGUGCUcGCGCUGACCg -3'
miRNA:   3'- aggGCUGCUUgGUAUGA-CGCGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 48207 0.72 0.619947
Target:  5'- aCCCGACGAcgauCUcgACUGCGauCCGGCa -3'
miRNA:   3'- aGGGCUGCUu---GGuaUGACGC--GGCUGg -5'
8545 3' -55.3 NC_002169.1 + 36702 0.75 0.499926
Target:  5'- gCCCGGCGAAUCGUACUGCa-UGGCg -3'
miRNA:   3'- aGGGCUGCUUGGUAUGACGcgGCUGg -5'
8545 3' -55.3 NC_002169.1 + 129846 0.76 0.443743
Target:  5'- uUCCCGGgGAAcCCAUACUGUuUCGACUg -3'
miRNA:   3'- -AGGGCUgCUU-GGUAUGACGcGGCUGG- -5'
8545 3' -55.3 NC_002169.1 + 61848 0.78 0.35078
Target:  5'- aUCCCGACGGACaCAUuaauCUGuCGCUGGCg -3'
miRNA:   3'- -AGGGCUGCUUG-GUAu---GAC-GCGGCUGg -5'
8545 3' -55.3 NC_002169.1 + 36050 0.78 0.343045
Target:  5'- aUCCCGACGAcaaaacguCCAUG-UGCGCCG-CCg -3'
miRNA:   3'- -AGGGCUGCUu-------GGUAUgACGCGGCuGG- -5'
8545 3' -55.3 NC_002169.1 + 22316 1.13 0.001856
Target:  5'- gUCCCGACGAACCAUACUGCGCCGACCg -3'
miRNA:   3'- -AGGGCUGCUUGGUAUGACGCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.