miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8552 3' -44.4 NC_002169.1 + 120230 0.88 0.404307
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aagucAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 120037 1.02 0.077116
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 119796 0.99 0.116622
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 119616 1.01 0.089485
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 119599 1.09 0.030156
Target:  5'- uUUCAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 119518 1 0.100714
Target:  5'- uUUUAGUACACGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 119418 1.02 0.077116
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 119321 0.82 0.698498
Target:  5'- uUUCA-UAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUgUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105690 0.78 0.877284
Target:  5'- ----aUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aagucAUGUGCUAGAAACGAAAGuAG- -5'
8552 3' -44.4 NC_002169.1 + 105604 0.8 0.815054
Target:  5'- uUUCA-UACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUcAUGUGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105516 0.8 0.795252
Target:  5'- gUCGGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aAGUCAUGUGcUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105500 1.03 0.070499
Target:  5'- -aCAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105407 0.89 0.376191
Target:  5'- cUUUAaUACACGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105400 1.04 0.060666
Target:  5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105322 0.74 0.977328
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aagUCAUGUGcUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105287 0.9 0.349424
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAg -5'
8552 3' -44.4 NC_002169.1 + 105202 0.82 0.709697
Target:  5'- uUUUAaUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105150 0.83 0.653131
Target:  5'- uUUCGc-ACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUcaUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105091 1.05 0.052167
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105032 0.85 0.562078
Target:  5'- aUCAGccUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGUC--AUGuGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.