miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8552 3' -44.4 NC_002169.1 + 104764 0.91 0.292375
Target:  5'- uUUCAaUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 11442 0.99 0.113264
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 10935 0.99 0.116623
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 42188 0.98 0.134849
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 53039 0.97 0.138796
Target:  5'- aUUCuAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAG-UCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 52662 0.96 0.174368
Target:  5'- uUUUAGUACACGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 41869 0.94 0.211936
Target:  5'- uUUCA-UACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 11167 0.92 0.277471
Target:  5'- -gCAGaaaUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUC---AUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 10817 0.91 0.292375
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUGCUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 104833 1.01 0.089485
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 42255 1.01 0.089485
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 120037 1.02 0.077116
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 119599 1.09 0.030156
Target:  5'- uUUCAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 41996 1.09 0.031093
Target:  5'- gUUCAGUACACGAUCUUUGCUUUCAUCu -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 52782 1.05 0.049101
Target:  5'- aUCGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 53120 1.05 0.050611
Target:  5'- aUUCAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105091 1.05 0.052167
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105500 1.03 0.070499
Target:  5'- -aCAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 104953 1.03 0.070499
Target:  5'- cUUCAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 119418 1.02 0.077116
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.