miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8552 3' -44.4 NC_002169.1 + 104956 0.66 0.999991
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAuGUgcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105287 0.9 0.349424
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAg -5'
8552 3' -44.4 NC_002169.1 + 52978 0.92 0.284846
Target:  5'- uUUUAGUACACcAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105400 1.04 0.060666
Target:  5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 42453 0.73 0.986266
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aagUCA---UGUGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105690 0.78 0.877284
Target:  5'- ----aUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aagucAUGUGCUAGAAACGAAAGuAG- -5'
8552 3' -44.4 NC_002169.1 + 105516 0.8 0.795252
Target:  5'- gUCGGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aAGUCAUGUGcUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 10713 0.81 0.753542
Target:  5'- uUUUAGUACACaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AAGUCAUGUGcUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105032 0.85 0.562078
Target:  5'- aUCAGccUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGUC--AUGuGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 53238 0.89 0.367117
Target:  5'- uUUCAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 11761 0.86 0.496029
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aagucAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 11366 0.84 0.596029
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 5642 0.7 0.998408
Target:  5'- uUUguGUACGCGAUCgugauuguaugugGCUUUCAUg -3'
miRNA:   3'- -AAguCAUGUGCUAGaaa----------CGAAAGUAg -5'
8552 3' -44.4 NC_002169.1 + 11639 0.88 0.41397
Target:  5'- aUUCuAGUACAUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AAG-UCAUGUGCUAgAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 53095 0.7 0.998376
Target:  5'- uUUCA-UACuCaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUcAUGuGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105150 0.83 0.653131
Target:  5'- uUUCGc-ACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUcaUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 120230 0.88 0.404307
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aagucAUGUGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 42065 0.92 0.284846
Target:  5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGuGCUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 42378 0.71 0.997608
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aagucaUGUGcUAGAAACGAAAGUAG- -5'
8552 3' -44.4 NC_002169.1 + 105604 0.8 0.815054
Target:  5'- uUUCA-UACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUcAUGUGcUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.