miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8559 3' -58.3 NC_002169.1 + 46953 0.66 0.800373
Target:  5'- cGAugCgAcCGCCCGaguuGCCGGugGUcuUGCu -3'
miRNA:   3'- -UUugGgU-GCGGGCg---CGGCCugUA--ACG- -5'
8559 3' -58.3 NC_002169.1 + 56601 0.66 0.791368
Target:  5'- cGAUCUcguaaACGCggGCGCCGG-CGUUGCa -3'
miRNA:   3'- uUUGGG-----UGCGggCGCGGCCuGUAACG- -5'
8559 3' -58.3 NC_002169.1 + 56761 0.66 0.772939
Target:  5'- -cGCCgGCGCCCGCGUuuacgagauCGG-CGUcgaugUGCu -3'
miRNA:   3'- uuUGGgUGCGGGCGCG---------GCCuGUA-----ACG- -5'
8559 3' -58.3 NC_002169.1 + 66457 0.66 0.772003
Target:  5'- -cGCCgGCGCgaaCGCacuuguugguguaGCCGGACAcgUUGCu -3'
miRNA:   3'- uuUGGgUGCGg--GCG-------------CGGCCUGU--AACG- -5'
8559 3' -58.3 NC_002169.1 + 57772 0.67 0.744379
Target:  5'- --gUgCACGUCgGCGUCGGACAUUucgaacGCg -3'
miRNA:   3'- uuuGgGUGCGGgCGCGGCCUGUAA------CG- -5'
8559 3' -58.3 NC_002169.1 + 35281 0.67 0.734651
Target:  5'- cGGCgUCGCGUUCGCaauaCUGGGCAUUGCg -3'
miRNA:   3'- uUUG-GGUGCGGGCGc---GGCCUGUAACG- -5'
8559 3' -58.3 NC_002169.1 + 84567 0.67 0.734651
Target:  5'- cGGCCagCACGacaCCGCGCCGGAauuugaGCa -3'
miRNA:   3'- uUUGG--GUGCg--GGCGCGGCCUguaa--CG- -5'
8559 3' -58.3 NC_002169.1 + 58667 0.67 0.734651
Target:  5'- -cGCUCGCGUacaCGUGCaGGACAUUGa -3'
miRNA:   3'- uuUGGGUGCGg--GCGCGgCCUGUAACg -5'
8559 3' -58.3 NC_002169.1 + 95504 0.68 0.654398
Target:  5'- uGACUaACGUCCGCGCgUGGACGacGCg -3'
miRNA:   3'- uUUGGgUGCGGGCGCG-GCCUGUaaCG- -5'
8559 3' -58.3 NC_002169.1 + 53472 0.69 0.572951
Target:  5'- uAACCCGCgGCgCCGuCGCUGGcCAUUcGCg -3'
miRNA:   3'- uUUGGGUG-CG-GGC-GCGGCCuGUAA-CG- -5'
8559 3' -58.3 NC_002169.1 + 22643 0.7 0.552866
Target:  5'- ---aCUACGCCCGCuucccaaguGCCGGGCAcgggGCc -3'
miRNA:   3'- uuugGGUGCGGGCG---------CGGCCUGUaa--CG- -5'
8559 3' -58.3 NC_002169.1 + 36909 0.72 0.411829
Target:  5'- --uCCaCACGCCCGUGuuGGG-AUUGCa -3'
miRNA:   3'- uuuGG-GUGCGGGCGCggCCUgUAACG- -5'
8559 3' -58.3 NC_002169.1 + 14020 0.73 0.403218
Target:  5'- -uGCCCACGCCgGCGCgcaacacgaCGGGCGcaaUGCc -3'
miRNA:   3'- uuUGGGUGCGGgCGCG---------GCCUGUa--ACG- -5'
8559 3' -58.3 NC_002169.1 + 60611 1.08 0.00174
Target:  5'- uAAACCCACGCCCGCGCCGGACAUUGCc -3'
miRNA:   3'- -UUUGGGUGCGGGCGCGGCCUGUAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.