Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8559 | 5' | -47.6 | NC_002169.1 | + | 13614 | 0.73 | 0.937635 |
Target: 5'- -gGCAGCGGUaUGCugUG-AAACACGUc -3' miRNA: 3'- caCGUUGCUA-ACGugGCaUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 134816 | 0.73 | 0.926786 |
Target: 5'- -gGCGACGAcuuugUGCACCagcuUAGGCACGUc -3' miRNA: 3'- caCGUUGCUa----ACGUGGc---AUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 29120 | 0.74 | 0.920951 |
Target: 5'- -aGCGugGAgcgUGCGCuCGUAAGUGCGCu -3' miRNA: 3'- caCGUugCUa--ACGUG-GCAUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 35336 | 0.75 | 0.890618 |
Target: 5'- -cGCAACGuGUUGCAgCGUAGACgauucguuccgcucaGCGCu -3' miRNA: 3'- caCGUUGC-UAACGUgGCAUUUG---------------UGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 60652 | 1.13 | 0.009651 |
Target: 5'- uGUGCAACGAUUGCACCGUAAACACGCu -3' miRNA: 3'- -CACGUUGCUAACGUGGCAUUUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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