miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8561 3' -44.4 NC_002169.1 + 5642 0.7 0.998408
Target:  5'- uUUguGUACGCGAUCgugauuguaugugGCUUUCAUg -3'
miRNA:   3'- -AAguCAUGUGCUAGaaa----------CGAAAGUAg -5'
8561 3' -44.4 NC_002169.1 + 10520 0.78 0.877284
Target:  5'- -----cACaACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aagucaUG-UGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 10709 0.88 0.423774
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGuGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 10713 0.81 0.753542
Target:  5'- uUUUAGUACACaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AAGUCAUGUGcUAgAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 10817 0.91 0.292375
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUGCUAgAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 10904 1 0.100714
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 10935 0.99 0.116623
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11012 1.01 0.089485
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11036 0.88 0.423774
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGuGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11132 0.86 0.496029
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11167 0.92 0.277471
Target:  5'- -gCAGaaaUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUC---AUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11230 0.97 0.155665
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11281 0.78 0.877284
Target:  5'- aUUUAaUACACaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUcAUGUGcUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11366 0.84 0.596029
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11442 0.99 0.113264
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11477 1.01 0.086869
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11570 0.91 0.307898
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaGUCAUGuGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11639 0.88 0.41397
Target:  5'- aUUCuAGUACAUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AAG-UCAUGUGCUAgAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11761 0.86 0.496029
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aagucAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 41768 0.77 0.920179
Target:  5'- cUCcaUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGucAUGuGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.