Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8561 | 3' | -44.4 | NC_002169.1 | + | 104764 | 0.91 | 0.292375 |
Target: 5'- uUUCAaUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 11442 | 0.99 | 0.113264 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 10935 | 0.99 | 0.116623 |
Target: 5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 42188 | 0.98 | 0.134849 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 53039 | 0.97 | 0.138796 |
Target: 5'- aUUCuAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAG-UCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 52662 | 0.96 | 0.174368 |
Target: 5'- uUUUAGUACACGAUgUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUCAUGUGCUAgAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 41869 | 0.94 | 0.211936 |
Target: 5'- uUUCA-UACACGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 11167 | 0.92 | 0.277471 |
Target: 5'- -gCAGaaaUGCACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaGUC---AUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 10817 | 0.91 | 0.292375 |
Target: 5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3' miRNA: 3'- aaGUCAUGUGCUAgAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 104833 | 1.01 | 0.089485 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 42255 | 1.01 | 0.089485 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 120037 | 1.02 | 0.077116 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 119599 | 1.09 | 0.030156 |
Target: 5'- uUUCAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 41996 | 1.09 | 0.031093 |
Target: 5'- gUUCAGUACACGAUCUUUGCUUUCAUCu -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 52782 | 1.05 | 0.049101 |
Target: 5'- aUCGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 53120 | 1.05 | 0.050611 |
Target: 5'- aUUCAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 105091 | 1.05 | 0.052167 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 105500 | 1.03 | 0.070499 |
Target: 5'- -aCAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 104953 | 1.03 | 0.070499 |
Target: 5'- cUUCAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 119418 | 1.02 | 0.077116 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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