Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8561 | 3' | -44.4 | NC_002169.1 | + | 104956 | 0.66 | 0.999991 |
Target: 5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- aaGUCAuGUgcUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 105287 | 0.9 | 0.349424 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3' miRNA: 3'- aaGUCAUGUGCUAGAAACGAAAGUAg -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 52978 | 0.92 | 0.284846 |
Target: 5'- uUUUAGUACACcAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUCAUGUGcUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 105400 | 1.04 | 0.060666 |
Target: 5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 42453 | 0.73 | 0.986266 |
Target: 5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aagUCA---UGUGcUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 105690 | 0.78 | 0.877284 |
Target: 5'- ----aUACACGAUCUUUGCUUUC-UCg -3' miRNA: 3'- aagucAUGUGCUAGAAACGAAAGuAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 105516 | 0.8 | 0.795252 |
Target: 5'- gUCGGUACAUcAUgUUUGCUUUCAUCc -3' miRNA: 3'- aAGUCAUGUGcUAgAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 10713 | 0.81 | 0.753542 |
Target: 5'- uUUUAGUACACaAUgUUUGCUUUCAUCu -3' miRNA: 3'- -AAGUCAUGUGcUAgAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 11366 | 0.84 | 0.596029 |
Target: 5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 53238 | 0.89 | 0.367117 |
Target: 5'- uUUCAaUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 11761 | 0.86 | 0.496029 |
Target: 5'- ----aUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aagucAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 105032 | 0.85 | 0.562078 |
Target: 5'- aUCAGccUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aAGUC--AUGuGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 5642 | 0.7 | 0.998408 |
Target: 5'- uUUguGUACGCGAUCgugauuguaugugGCUUUCAUg -3' miRNA: 3'- -AAguCAUGUGCUAGaaa----------CGAAAGUAg -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 11639 | 0.88 | 0.41397 |
Target: 5'- aUUCuAGUACAUGAUgUUUGCUUUCAUCg -3' miRNA: 3'- -AAG-UCAUGUGCUAgAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 53095 | 0.7 | 0.998376 |
Target: 5'- uUUCA-UACuCaAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUcAUGuGcUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 105150 | 0.83 | 0.653131 |
Target: 5'- uUUCGc-ACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUcaUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 120230 | 0.88 | 0.404307 |
Target: 5'- ----aUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aagucAUGUGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 42065 | 0.92 | 0.284846 |
Target: 5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUCAUGuGCUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 42378 | 0.71 | 0.997608 |
Target: 5'- -----aACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aagucaUGUGcUAGAAACGAAAGUAG- -5' |
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8561 | 3' | -44.4 | NC_002169.1 | + | 105604 | 0.8 | 0.815054 |
Target: 5'- uUUCA-UACACaAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAGUcAUGUGcUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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