miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8564 5' -55.9 NC_002169.1 + 61112 0.66 0.857772
Target:  5'- -uGUCGCGCAGcgagaCGGUgAcGCGCUGGCa -3'
miRNA:   3'- uuUAGCGCGUCc----GCCAgU-CGUGGUUG- -5'
8564 5' -55.9 NC_002169.1 + 21658 0.66 0.84973
Target:  5'- ---aUGCGgAGGCGa-CGGCAUCAACg -3'
miRNA:   3'- uuuaGCGCgUCCGCcaGUCGUGGUUG- -5'
8564 5' -55.9 NC_002169.1 + 58815 0.66 0.84973
Target:  5'- gAGcgCGCGCAGGCuGUC-GCGCaGAUa -3'
miRNA:   3'- -UUuaGCGCGUCCGcCAGuCGUGgUUG- -5'
8564 5' -55.9 NC_002169.1 + 127929 0.66 0.833027
Target:  5'- gGGAUCGUggugauGCgAGGCGG-CGGCGgCGGCg -3'
miRNA:   3'- -UUUAGCG------CG-UCCGCCaGUCGUgGUUG- -5'
8564 5' -55.9 NC_002169.1 + 99416 0.67 0.815552
Target:  5'- --uUUGCGC-GGCGGUCGcGUcggACCGAUa -3'
miRNA:   3'- uuuAGCGCGuCCGCCAGU-CG---UGGUUG- -5'
8564 5' -55.9 NC_002169.1 + 1552 0.67 0.788042
Target:  5'- uGGUgGCGguGGCGG-CGGUGgCGGCg -3'
miRNA:   3'- uUUAgCGCguCCGCCaGUCGUgGUUG- -5'
8564 5' -55.9 NC_002169.1 + 46108 0.68 0.739358
Target:  5'- cGGUCGCGCucucgaucuGGCGGcggCGGUGCCGGa -3'
miRNA:   3'- uUUAGCGCGu--------CCGCCa--GUCGUGGUUg -5'
8564 5' -55.9 NC_002169.1 + 73801 0.69 0.677785
Target:  5'- ---gCGCGUcGGauCGGUCAGCGCgAGCa -3'
miRNA:   3'- uuuaGCGCGuCC--GCCAGUCGUGgUUG- -5'
8564 5' -55.9 NC_002169.1 + 77764 0.71 0.561509
Target:  5'- ---aCGCGC-GGCacgcgauGGUgCAGCACCAACg -3'
miRNA:   3'- uuuaGCGCGuCCG-------CCA-GUCGUGGUUG- -5'
8564 5' -55.9 NC_002169.1 + 116446 0.72 0.531764
Target:  5'- ----aGCGgAGGCGG-CAGCAgCAGCa -3'
miRNA:   3'- uuuagCGCgUCCGCCaGUCGUgGUUG- -5'
8564 5' -55.9 NC_002169.1 + 120580 0.72 0.491729
Target:  5'- --uUUGCaaGGGCGucGUCAGCGCCAACa -3'
miRNA:   3'- uuuAGCGcgUCCGC--CAGUCGUGGUUG- -5'
8564 5' -55.9 NC_002169.1 + 112447 0.75 0.36454
Target:  5'- gAGAUCGCcucuCAGGCGG-CAGuCGCCGGCg -3'
miRNA:   3'- -UUUAGCGc---GUCCGCCaGUC-GUGGUUG- -5'
8564 5' -55.9 NC_002169.1 + 79848 1.08 0.002412
Target:  5'- cAAAUCGCGCAGGCGGUCAGCACCAACa -3'
miRNA:   3'- -UUUAGCGCGUCCGCCAGUCGUGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.