miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8565 5' -48.3 NC_002169.1 + 111729 0.66 0.998573
Target:  5'- -cGACGGGaAUGGUGCAAUuGUacgAUCg -3'
miRNA:   3'- gaCUGCCCgUGCUACGUUAcUAa--UAG- -5'
8565 5' -48.3 NC_002169.1 + 44746 0.66 0.998545
Target:  5'- -aGuuCGGGCACGGUGCGuugcauaugcucuAUGAUg--- -3'
miRNA:   3'- gaCu-GCCCGUGCUACGU-------------UACUAauag -5'
8565 5' -48.3 NC_002169.1 + 22625 0.66 0.997837
Target:  5'- gUGcCGGGCACGGggccaucgGCGAcgccgaggaacgGAUUAUCg -3'
miRNA:   3'- gACuGCCCGUGCUa-------CGUUa-----------CUAAUAG- -5'
8565 5' -48.3 NC_002169.1 + 110591 0.67 0.996466
Target:  5'- -cGAUGGGC-CGAgaguuUGCAGUGcAUUcgCg -3'
miRNA:   3'- gaCUGCCCGuGCU-----ACGUUAC-UAAuaG- -5'
8565 5' -48.3 NC_002169.1 + 69778 0.68 0.993336
Target:  5'- gUGAUGGGaUACGAUGCGucucUGAg-GUCg -3'
miRNA:   3'- gACUGCCC-GUGCUACGUu---ACUaaUAG- -5'
8565 5' -48.3 NC_002169.1 + 43836 0.68 0.99228
Target:  5'- uUGAUGGGuCACGuacuUGacGUGGUUGUCg -3'
miRNA:   3'- gACUGCCC-GUGCu---ACguUACUAAUAG- -5'
8565 5' -48.3 NC_002169.1 + 58598 0.68 0.991095
Target:  5'- -cGACGGGUcCGAUGUAGacgcgcgauUGAUUAa- -3'
miRNA:   3'- gaCUGCCCGuGCUACGUU---------ACUAAUag -5'
8565 5' -48.3 NC_002169.1 + 61782 0.71 0.951183
Target:  5'- uUGACGGuGC-CGAgacGCAGUGAUcGUCc -3'
miRNA:   3'- gACUGCC-CGuGCUa--CGUUACUAaUAG- -5'
8565 5' -48.3 NC_002169.1 + 27257 0.73 0.913815
Target:  5'- --cAUGGGCAUGGUGCGcAUGAUUAg- -3'
miRNA:   3'- gacUGCCCGUGCUACGU-UACUAAUag -5'
8565 5' -48.3 NC_002169.1 + 2275 0.74 0.879005
Target:  5'- -cGAUGGaauuGUACGAUGCGGUGuGUUAUCg -3'
miRNA:   3'- gaCUGCC----CGUGCUACGUUAC-UAAUAG- -5'
8565 5' -48.3 NC_002169.1 + 98068 0.74 0.879005
Target:  5'- uUGACGGGCAcuCGGUGUccauuGAaGAUUGUCu -3'
miRNA:   3'- gACUGCCCGU--GCUACG-----UUaCUAAUAG- -5'
8565 5' -48.3 NC_002169.1 + 35887 0.77 0.7616
Target:  5'- cCUGAcCGGGCGCGAUGCGAUc------ -3'
miRNA:   3'- -GACU-GCCCGUGCUACGUUAcuaauag -5'
8565 5' -48.3 NC_002169.1 + 51661 0.79 0.644116
Target:  5'- aUGACGGGCACGAUGgAGuaucUGAU-GUCu -3'
miRNA:   3'- gACUGCCCGUGCUACgUU----ACUAaUAG- -5'
8565 5' -48.3 NC_002169.1 + 84069 1.12 0.009014
Target:  5'- gCUGACGGGCACGAUGCAAUGAUUAUCg -3'
miRNA:   3'- -GACUGCCCGUGCUACGUUACUAAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.