miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8567 3' -54.6 NC_002169.1 + 22490 0.66 0.924544
Target:  5'- -aGCUcuACGGCGCgGUCGgCGCAGu-- -3'
miRNA:   3'- caUGAu-UGCCGCG-CAGCgGCGUUgaa -5'
8567 3' -54.6 NC_002169.1 + 42791 0.66 0.924544
Target:  5'- cGUGCUAGCGcucgacacgcuGUGCGUagucaaaggcggCGCCGCGAUc- -3'
miRNA:   3'- -CAUGAUUGC-----------CGCGCA------------GCGGCGUUGaa -5'
8567 3' -54.6 NC_002169.1 + 49814 0.66 0.900201
Target:  5'- ----gAGCGGCGUGUCGCUGUugaugAAUUUg -3'
miRNA:   3'- caugaUUGCCGCGCAGCGGCG-----UUGAA- -5'
8567 3' -54.6 NC_002169.1 + 3606 0.66 0.900201
Target:  5'- -aAUUuuuGCGGCaaugGUGUCGUCGCAGCg- -3'
miRNA:   3'- caUGAu--UGCCG----CGCAGCGGCGUUGaa -5'
8567 3' -54.6 NC_002169.1 + 2266 0.67 0.893494
Target:  5'- uGUACgauGCGGUGUGUUaUCGCGACa- -3'
miRNA:   3'- -CAUGau-UGCCGCGCAGcGGCGUUGaa -5'
8567 3' -54.6 NC_002169.1 + 57416 0.67 0.886546
Target:  5'- -cACUA---GCGCGUCGUCGguGCUUa -3'
miRNA:   3'- caUGAUugcCGCGCAGCGGCguUGAA- -5'
8567 3' -54.6 NC_002169.1 + 95894 0.67 0.879358
Target:  5'- aUACUAAUGGCGacgacgauaGUCGUaCGUGACUUg -3'
miRNA:   3'- cAUGAUUGCCGCg--------CAGCG-GCGUUGAA- -5'
8567 3' -54.6 NC_002169.1 + 125572 0.67 0.856422
Target:  5'- ----cGGCGccuucGCGCGUCGCCGCcACUc -3'
miRNA:   3'- caugaUUGC-----CGCGCAGCGGCGuUGAa -5'
8567 3' -54.6 NC_002169.1 + 25688 0.68 0.831555
Target:  5'- -aGC-GACGGCgaaccgccggGCGUCGCCGcCAACg- -3'
miRNA:   3'- caUGaUUGCCG----------CGCAGCGGC-GUUGaa -5'
8567 3' -54.6 NC_002169.1 + 30476 0.68 0.831555
Target:  5'- -aACgugAGCGGCgGCGUCGUCGaCAAUa- -3'
miRNA:   3'- caUGa--UUGCCG-CGCAGCGGC-GUUGaa -5'
8567 3' -54.6 NC_002169.1 + 34664 0.68 0.822871
Target:  5'- -gGC-GACGGCGcCGcCGCCGCAAg-- -3'
miRNA:   3'- caUGaUUGCCGC-GCaGCGGCGUUgaa -5'
8567 3' -54.6 NC_002169.1 + 102858 0.69 0.808599
Target:  5'- aGUAgUAGCGGCGaCGuaacugccuccucugUCGCCGUGGCa- -3'
miRNA:   3'- -CAUgAUUGCCGC-GC---------------AGCGGCGUUGaa -5'
8567 3' -54.6 NC_002169.1 + 8340 0.69 0.786389
Target:  5'- --uUUGACGGCaucUCGCCGCAGCUg -3'
miRNA:   3'- cauGAUUGCCGcgcAGCGGCGUUGAa -5'
8567 3' -54.6 NC_002169.1 + 55862 0.69 0.767229
Target:  5'- --cCUGACGGCGUcuaCGCCGCAgACUUu -3'
miRNA:   3'- cauGAUUGCCGCGca-GCGGCGU-UGAA- -5'
8567 3' -54.6 NC_002169.1 + 34508 0.69 0.767229
Target:  5'- uUGCggcGGCGGCGcCGUCGCCGauauuGACUc -3'
miRNA:   3'- cAUGa--UUGCCGC-GCAGCGGCg----UUGAa -5'
8567 3' -54.6 NC_002169.1 + 107272 0.7 0.73756
Target:  5'- ---aUGACGGCGuCGUCGCCauaauaauguGCAGCa- -3'
miRNA:   3'- caugAUUGCCGC-GCAGCGG----------CGUUGaa -5'
8567 3' -54.6 NC_002169.1 + 15496 0.7 0.707017
Target:  5'- -gACcAGCGGCGCGaugagcugUGCCGCGGCa- -3'
miRNA:   3'- caUGaUUGCCGCGCa-------GCGGCGUUGaa -5'
8567 3' -54.6 NC_002169.1 + 100722 0.72 0.623319
Target:  5'- -aACUcGACGGCGC-UCGCCGgGACg- -3'
miRNA:   3'- caUGA-UUGCCGCGcAGCGGCgUUGaa -5'
8567 3' -54.6 NC_002169.1 + 77924 0.73 0.581348
Target:  5'- gGUGCUGcaccaucgcguGCcGCGCGUCGCCGaCGACg- -3'
miRNA:   3'- -CAUGAU-----------UGcCGCGCAGCGGC-GUUGaa -5'
8567 3' -54.6 NC_002169.1 + 1233 0.78 0.315863
Target:  5'- uUGC-AGCGGCGCGUCGCCGUcgAACc- -3'
miRNA:   3'- cAUGaUUGCCGCGCAGCGGCG--UUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.