Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8568 | 5' | -45.2 | NC_002169.1 | + | 104927 | 0.8 | 0.79421 |
Target: 5'- gUCGAcGAAAGCAAAGAUCAUGUa--- -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 104987 | 1.12 | 0.019621 |
Target: 5'- uUCGAUGAAAGCAAAGAUCAUGUGCGAa -3' miRNA: 3'- -AGCUACUUUCGUUUCUAGUACACGCU- -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 104997 | 0.9 | 0.347889 |
Target: 5'- uUCGAUGAAAGCAAAGAUCAUGUa--- -3' miRNA: 3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 105115 | 0.73 | 0.986603 |
Target: 5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 105130 | 0.71 | 0.997108 |
Target: 5'- ----cGAAAGCAAAGAUCAUGUacuaGAg -3' miRNA: 3'- agcuaCUUUCGUUUCUAGUACAcg--CU- -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 105236 | 0.79 | 0.83227 |
Target: 5'- gUCGAcGAAAGCAAAGAUCGUGUa--- -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 105255 | 0.89 | 0.382974 |
Target: 5'- uUCGAUGAAAGCAAAGAUCGUGUa--- -3' miRNA: 3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 105376 | 0.66 | 0.99997 |
Target: 5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGUGUa--- -3' miRNA: 3'- -AGCUaCU----------UUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 105441 | 0.77 | 0.904391 |
Target: 5'- uUCGAcGAAAGCAAAGAUUGUGUaUGAa -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGUACAcGCU- -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 105532 | 0.89 | 0.382974 |
Target: 5'- uUCGAUGAAAGCAAAGAUCGUGUa--- -3' miRNA: 3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 105569 | 0.83 | 0.65515 |
Target: 5'- -gGAUGAAAGCAAAGAUCGUGUauuaaaguuGCGu -3' miRNA: 3'- agCUACUUUCGUUUCUAGUACA---------CGCu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 105660 | 0.78 | 0.882674 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUacuGUGAu -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACA---CGCU- -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 118888 | 0.74 | 0.978046 |
Target: 5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCu- -3' miRNA: 3'- -AGCUACUUUCGuu--UCUAGU------------ACACGcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 119354 | 0.75 | 0.958491 |
Target: 5'- uUCGAUaAAAGCAAAGAUCGUGUa--- -3' miRNA: 3'- -AGCUAcUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 119452 | 0.9 | 0.347889 |
Target: 5'- uUCGAUGAAAGCAAAGAUCAUGUa--- -3' miRNA: 3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 119580 | 0.72 | 0.992332 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 119635 | 0.72 | 0.992332 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 119762 | 0.85 | 0.533241 |
Target: 5'- uUCGAcGAAAGCAAAGAUCGUGUacugaaaauaGCGAc -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGUACA----------CGCU- -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 120071 | 0.79 | 0.83227 |
Target: 5'- uUCGAcGAAAGCAAAGAUCGUGUa--- -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5' |
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8568 | 5' | -45.2 | NC_002169.1 | + | 120199 | 0.72 | 0.992332 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAcgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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