miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 5' -45.2 NC_002169.1 + 42222 0.68 0.999638
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUuuGGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgCU- -5'
8568 5' -45.2 NC_002169.1 + 42291 0.7 0.998642
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUuuGAc -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgCU- -5'
8568 5' -45.2 NC_002169.1 + 42350 0.89 0.356442
Target:  5'- cUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 42419 0.9 0.347889
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 52698 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUacuaGAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 52815 0.81 0.75336
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 52825 0.75 0.958491
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 52932 0.76 0.92943
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUaUGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUaCAcGCU- -5'
8568 5' -45.2 NC_002169.1 + 52942 0.75 0.958491
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUacCGAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAc-GCU- -5'
8568 5' -45.2 NC_002169.1 + 53060 0.73 0.982721
Target:  5'- -gGAUGAAAGCAAAGAUgAUGUa--- -3'
miRNA:   3'- agCUACUUUCGUUUCUAgUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 53076 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 53156 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 53204 0.9 0.347889
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUacuaGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 53284 0.8 0.79421
Target:  5'- gUCGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 64392 0.66 0.999978
Target:  5'- aCGAauUGaAAAGCAAAGGUUgcGUGCu- -3'
miRNA:   3'- aGCU--AC-UUUCGUUUCUAGuaCACGcu -5'
8568 5' -45.2 NC_002169.1 + 71670 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUacuaGAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 71797 0.9 0.33041
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUacugaaauaguuuGUGAu -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACA-------------CGCU- -5'
8568 5' -45.2 NC_002169.1 + 80180 0.8 0.774088
Target:  5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCAUGUGCa- -3'
miRNA:   3'- -AGCUACU------------UUCGUuuCUAGUACACGcu -5'
8568 5' -45.2 NC_002169.1 + 93450 0.66 0.999984
Target:  5'- gUCGAUGAAGGUcugcagUAUGUGCa- -3'
miRNA:   3'- -AGCUACUUUCGuuucuaGUACACGcu -5'
8568 5' -45.2 NC_002169.1 + 103992 0.66 0.999989
Target:  5'- cUCGGUGAcGGCGacGAGAccaUCGUccGCGAu -3'
miRNA:   3'- -AGCUACUuUCGU--UUCU---AGUAcaCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.