miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 5' -45.2 NC_002169.1 + 9601 0.66 0.999978
Target:  5'- aCGAUGggGGUAAuGAaaaauucaaagUCGUGUGUc- -3'
miRNA:   3'- aGCUACuuUCGUUuCU-----------AGUACACGcu -5'
8568 5' -45.2 NC_002169.1 + 10679 0.89 0.373986
Target:  5'- gUCGAUGAAAGCAAAGAUCGuUGUGgGu -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGU-ACACgCu -5'
8568 5' -45.2 NC_002169.1 + 10741 0.8 0.79421
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 10849 0.9 0.347889
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11068 0.8 0.79421
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUacuaGAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 11096 0.72 0.990336
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUaccaaaguuuguauuGCGu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACA---------------CGCu -5'
8568 5' -45.2 NC_002169.1 + 11204 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11315 0.82 0.721341
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUacuauuGCGu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACA------CGCu -5'
8568 5' -45.2 NC_002169.1 + 11332 0.79 0.841266
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGcauuucUGCa- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUAC------ACGcu -5'
8568 5' -45.2 NC_002169.1 + 11445 0.82 0.677422
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11474 0.76 0.940239
Target:  5'- gUCGAUGAAAGCAAAcAUCAUGUacuaGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 11602 0.76 0.923597
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUacuauucuauuGCGGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACA-----------CGCU- -5'
8568 5' -45.2 NC_002169.1 + 11604 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11732 0.79 0.831358
Target:  5'- gUCGAUGAAAGCAAAGAUCGaguacuagaguuuUGUauuGCGu -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGU-------------ACA---CGCu -5'
8568 5' -45.2 NC_002169.1 + 12107 0.67 0.999945
Target:  5'- --aAUGcAAGCGAuacAGAaCAUGUGCGAa -3'
miRNA:   3'- agcUACuUUCGUU---UCUaGUACACGCU- -5'
8568 5' -45.2 NC_002169.1 + 19703 0.79 0.850036
Target:  5'- uUCGGUGAAAGaucAGggCAUGUGCGGc -3'
miRNA:   3'- -AGCUACUUUCguuUCuaGUACACGCU- -5'
8568 5' -45.2 NC_002169.1 + 21692 0.66 0.999978
Target:  5'- aCGGUGccuGGCAguuuuGAGGcauugcaacguUCGUGUGCGGg -3'
miRNA:   3'- aGCUACuu-UCGU-----UUCU-----------AGUACACGCU- -5'
8568 5' -45.2 NC_002169.1 + 42031 0.93 0.243687
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUaUGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcGCU- -5'
8568 5' -45.2 NC_002169.1 + 42032 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 42158 0.82 0.710469
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUACUUUCGUUUCUAGUACAcgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.