miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 5' -45.2 NC_002169.1 + 104987 1.12 0.019621
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUGCGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACACGCU- -5'
8568 5' -45.2 NC_002169.1 + 42031 0.93 0.243687
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUaUGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcGCU- -5'
8568 5' -45.2 NC_002169.1 + 71797 0.9 0.33041
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUacugaaauaguuuGUGAu -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACA-------------CGCU- -5'
8568 5' -45.2 NC_002169.1 + 53204 0.9 0.347889
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUacuaGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 42419 0.9 0.347889
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 104997 0.9 0.347889
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 119452 0.9 0.347889
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 10849 0.9 0.347889
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 42350 0.89 0.356442
Target:  5'- cUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 10679 0.89 0.373986
Target:  5'- gUCGAUGAAAGCAAAGAUCGuUGUGgGu -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGU-ACACgCu -5'
8568 5' -45.2 NC_002169.1 + 105532 0.89 0.382974
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 105255 0.89 0.382974
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 119762 0.85 0.533241
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUacugaaaauaGCGAc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACA----------CGCU- -5'
8568 5' -45.2 NC_002169.1 + 105569 0.83 0.65515
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUauuaaaguuGCGu -3'
miRNA:   3'- agCUACUUUCGUUUCUAGUACA---------CGCu -5'
8568 5' -45.2 NC_002169.1 + 11445 0.82 0.677422
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 42158 0.82 0.710469
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11315 0.82 0.721341
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUacuauuGCGu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACA------CGCu -5'
8568 5' -45.2 NC_002169.1 + 52815 0.81 0.75336
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 80180 0.8 0.774088
Target:  5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCAUGUGCa- -3'
miRNA:   3'- -AGCUACU------------UUCGUuuCUAGUACACGcu -5'
8568 5' -45.2 NC_002169.1 + 10741 0.8 0.79421
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.