miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 5' -45.2 NC_002169.1 + 42032 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11474 0.76 0.940239
Target:  5'- gUCGAUGAAAGCAAAcAUCAUGUacuaGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 119354 0.75 0.958491
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11204 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 52698 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUacuaGAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 53076 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 53156 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 71670 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUacuaGAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 11604 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 52932 0.76 0.92943
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUaUGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUaCAcGCU- -5'
8568 5' -45.2 NC_002169.1 + 105441 0.77 0.904391
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUaUGAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcGCU- -5'
8568 5' -45.2 NC_002169.1 + 120071 0.79 0.83227
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 10849 0.9 0.347889
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 119452 0.9 0.347889
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 105532 0.89 0.382974
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11315 0.82 0.721341
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUacuauuGCGu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACA------CGCu -5'
8568 5' -45.2 NC_002169.1 + 52815 0.81 0.75336
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 10741 0.8 0.79421
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11068 0.8 0.79421
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUacuaGAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 105236 0.79 0.83227
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.