miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 5' -45.2 NC_002169.1 + 105376 0.66 0.99997
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 80180 0.8 0.774088
Target:  5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCAUGUGCa- -3'
miRNA:   3'- -AGCUACU------------UUCGUuuCUAGUACACGcu -5'
8568 5' -45.2 NC_002169.1 + 11445 0.82 0.677422
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 42031 0.93 0.243687
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUaUGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAcGCU- -5'
8568 5' -45.2 NC_002169.1 + 11096 0.72 0.990336
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUaccaaaguuuguauuGCGu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACA---------------CGCu -5'
8568 5' -45.2 NC_002169.1 + 105115 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 118888 0.74 0.978046
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCu- -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGU------------ACACGcu -5'
8568 5' -45.2 NC_002169.1 + 52825 0.75 0.958491
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 105660 0.78 0.882674
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUacuGUGAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACA---CGCU- -5'
8568 5' -45.2 NC_002169.1 + 104927 0.8 0.79421
Target:  5'- gUCGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11332 0.79 0.841266
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGcauuucUGCa- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUAC------ACGcu -5'
8568 5' -45.2 NC_002169.1 + 11602 0.76 0.923597
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUacuauucuauuGCGGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACA-----------CGCU- -5'
8568 5' -45.2 NC_002169.1 + 129825 0.71 0.997108
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGUACACGcu -5'
8568 5' -45.2 NC_002169.1 + 11732 0.79 0.831358
Target:  5'- gUCGAUGAAAGCAAAGAUCGaguacuagaguuuUGUauuGCGu -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGU-------------ACA---CGCu -5'
8568 5' -45.2 NC_002169.1 + 119580 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 52942 0.75 0.958491
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUacCGAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAc-GCU- -5'
8568 5' -45.2 NC_002169.1 + 53284 0.8 0.79421
Target:  5'- gUCGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 42158 0.82 0.710469
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUACUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 120199 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 53060 0.73 0.982721
Target:  5'- -gGAUGAAAGCAAAGAUgAUGUa--- -3'
miRNA:   3'- agCUACUUUCGUUUCUAgUACAcgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.