miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 5' -45.2 NC_002169.1 + 105115 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11204 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 71670 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUacuaGAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 53156 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 53060 0.73 0.982721
Target:  5'- -gGAUGAAAGCAAAGAUgAUGUa--- -3'
miRNA:   3'- agCUACUUUCGUUUCUAgUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 118888 0.74 0.978046
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCu- -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGU------------ACACGcu -5'
8568 5' -45.2 NC_002169.1 + 52942 0.75 0.958491
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUacCGAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAc-GCU- -5'
8568 5' -45.2 NC_002169.1 + 52825 0.75 0.958491
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUa--- -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 119354 0.75 0.958491
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11474 0.76 0.940239
Target:  5'- gUCGAUGAAAGCAAAcAUCAUGUacuaGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 52932 0.76 0.92943
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUaUGAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUaCAcGCU- -5'
8568 5' -45.2 NC_002169.1 + 11602 0.76 0.923597
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUacuauucuauuGCGGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACA-----------CGCU- -5'
8568 5' -45.2 NC_002169.1 + 105441 0.77 0.904391
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUaUGAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcGCU- -5'
8568 5' -45.2 NC_002169.1 + 105660 0.78 0.882674
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUacuGUGAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACA---CGCU- -5'
8568 5' -45.2 NC_002169.1 + 19703 0.79 0.850036
Target:  5'- uUCGGUGAAAGaucAGggCAUGUGCGGc -3'
miRNA:   3'- -AGCUACUUUCguuUCuaGUACACGCU- -5'
8568 5' -45.2 NC_002169.1 + 11332 0.79 0.841266
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGcauuucUGCa- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUAC------ACGcu -5'
8568 5' -45.2 NC_002169.1 + 105236 0.79 0.83227
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 120071 0.79 0.83227
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11732 0.79 0.831358
Target:  5'- gUCGAUGAAAGCAAAGAUCGaguacuagaguuuUGUauuGCGu -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGU-------------ACA---CGCu -5'
8568 5' -45.2 NC_002169.1 + 10741 0.8 0.79421
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAcgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.