Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8569 | 3' | -39.4 | NC_002169.1 | + | 105202 | 1.09 | 0.109854 |
Target: 5'- uUUUAAUACACGAUCUUUGCUUUUGUCc -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAACAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 105400 | 1.01 | 0.287135 |
Target: 5'- cUUUAGUACACGAUCUUUGCUUUcGUCg -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 119418 | 0.98 | 0.354962 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUcGUCc -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 120037 | 0.98 | 0.354962 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUcGUCc -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 11477 | 0.98 | 0.354962 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUcGUCg -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 120233 | 0.98 | 0.364195 |
Target: 5'- -gUAAUACACGAUCUUUGCUUUcGUCg -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 10935 | 0.97 | 0.402757 |
Target: 5'- cUUUGGUACACGAUCUUUGCUUUcGUCc -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 119796 | 0.97 | 0.402757 |
Target: 5'- cUUUGGUACACGAUCUUUGCUUUcGUCc -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 11764 | 0.96 | 0.443808 |
Target: 5'- -aUAAUACACGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 42192 | 0.96 | 0.443808 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 11132 | 0.96 | 0.443808 |
Target: 5'- gUUUAAUACAUGAUCUUUGCUUUcGUCg -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 10904 | 0.96 | 0.443808 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUcGUCg -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 11442 | 0.96 | 0.443808 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 119518 | 0.96 | 0.454434 |
Target: 5'- uUUUAGUACACGAUCUUUGCUUUUaUCg -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAAcAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 11171 | 0.95 | 0.498247 |
Target: 5'- --aAAUGCACGAUCUUUGCUUUcGUCg -3' miRNA: 3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 119602 | 0.95 | 0.498247 |
Target: 5'- --cAGUACACGAUCUUUGCUUUcGUCg -3' miRNA: 3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 11366 | 0.94 | 0.543847 |
Target: 5'- uUUUAAUACAUGAUCUUUGCUUUcGUCc -3' miRNA: 3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 11230 | 0.93 | 0.567164 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUcGUCg -3' miRNA: 3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 105501 | 0.93 | 0.602574 |
Target: 5'- --cAGUACACGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5' |
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8569 | 3' | -39.4 | NC_002169.1 | + | 52784 | 0.92 | 0.614452 |
Target: 5'- --cGGUACACGAUCUUUGCUUUcGUCc -3' miRNA: 3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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