miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8569 3' -39.4 NC_002169.1 + 10709 0.84 0.942916
Target:  5'- -cUAGUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaAUUAUGuGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 10817 0.88 0.828362
Target:  5'- -cUAGUACACGAUgUUUGCUUUcGUCg -3'
miRNA:   3'- aaAUUAUGUGCUAgAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 10904 0.96 0.443808
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 10935 0.97 0.402757
Target:  5'- cUUUGGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11012 0.85 0.919191
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 11036 0.84 0.942916
Target:  5'- -cUAGUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaAUUAUGuGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11132 0.96 0.443808
Target:  5'- gUUUAAUACAUGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11171 0.95 0.498247
Target:  5'- --aAAUGCACGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11230 0.93 0.567164
Target:  5'- -cUAGUACAUGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11281 0.75 0.999897
Target:  5'- aUUUAAUACACaAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGcUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 11366 0.94 0.543847
Target:  5'- uUUUAAUACAUGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11442 0.96 0.443808
Target:  5'- -aUAGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11477 0.98 0.354962
Target:  5'- -aUAGUACACGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11563 0.76 0.999336
Target:  5'- cUUGA-ACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aAAUUaUGUGcUAGAAACGAAAACAG- -5'
8569 3' -39.4 NC_002169.1 + 11570 0.75 0.999897
Target:  5'- -cUAGUACuCGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- aaAUUAUGuGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 11636 0.72 0.999999
Target:  5'- -cUAGUACAUGAUgUUUGCUUUcaUCg -3'
miRNA:   3'- aaAUUAUGUGCUAgAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 11764 0.96 0.443808
Target:  5'- -aUAAUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 29673 0.74 0.999924
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- aaauuaUGUGCUAGa-AACG-AAAACAG- -5'
8569 3' -39.4 NC_002169.1 + 31417 0.73 0.999979
Target:  5'- ---cGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- aaauUAUGUGCUAGAa-----ACgAAAACAG- -5'
8569 3' -39.4 NC_002169.1 + 41771 0.77 0.998949
Target:  5'- ---cAUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauUAUGuGCUAGAAACGAAAaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.