miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8569 3' -39.4 NC_002169.1 + 120233 0.98 0.364195
Target:  5'- -gUAAUACACGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 120037 0.98 0.354962
Target:  5'- uUUUAGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 119796 0.97 0.402757
Target:  5'- cUUUGGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 119616 0.85 0.919191
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 119602 0.95 0.498247
Target:  5'- --cAGUACACGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 119518 0.96 0.454434
Target:  5'- uUUUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAAcAG- -5'
8569 3' -39.4 NC_002169.1 + 119418 0.98 0.354962
Target:  5'- uUUUAGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 119324 0.79 0.994981
Target:  5'- ---cAUAgACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauUAUgUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105693 0.86 0.882337
Target:  5'- -gUAAUACACGAUCUUUGCUUUc--- -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAacag -5'
8569 3' -39.4 NC_002169.1 + 105601 0.76 0.999478
Target:  5'- ---cAUACACaAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaauUAUGUGcUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105501 0.93 0.602574
Target:  5'- --cAGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105407 0.88 0.797973
Target:  5'- cUUUAAUACACGAUCUUUGCUUUc--- -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacag -5'
8569 3' -39.4 NC_002169.1 + 105400 1.01 0.287135
Target:  5'- cUUUAGUACACGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105322 0.67 1
Target:  5'- --aAGUACACaAUgUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGcUAgAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105287 0.86 0.890332
Target:  5'- -cUAGUACAUGAUCUUUGCUUUcGUa -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAaCAg -5'
8569 3' -39.4 NC_002169.1 + 105202 1.09 0.109854
Target:  5'- uUUUAAUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAACAG- -5'
8569 3' -39.4 NC_002169.1 + 105145 0.71 1
Target:  5'- -----cACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- aaauuaUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 105091 0.89 0.754685
Target:  5'- uUUUAGUACACGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 105026 0.75 0.999861
Target:  5'- ----cUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauuAUGuGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 104956 0.88 0.808323
Target:  5'- --cAGUACAUGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.