miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8569 3' -39.4 NC_002169.1 + 41999 0.83 0.961566
Target:  5'- --cAGUACACGAUCUUUGCUUUc--- -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAacag -5'
8569 3' -39.4 NC_002169.1 + 71637 0.84 0.948045
Target:  5'- --cAGUACACGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 11036 0.84 0.942916
Target:  5'- -cUAGUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaAUUAUGuGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 10709 0.84 0.942916
Target:  5'- -cUAGUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaAUUAUGuGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 119616 0.85 0.919191
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 11012 0.85 0.919191
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 42255 0.85 0.919191
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 104833 0.85 0.919191
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 105287 0.86 0.890332
Target:  5'- -cUAGUACAUGAUCUUUGCUUUcGUa -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAaCAg -5'
8569 3' -39.4 NC_002169.1 + 105693 0.86 0.882337
Target:  5'- -gUAAUACACGAUCUUUGCUUUc--- -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAacag -5'
8569 3' -39.4 NC_002169.1 + 42065 0.87 0.856583
Target:  5'- aUUUAGUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- -AAAUUAUGuGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 10817 0.88 0.828362
Target:  5'- -cUAGUACACGAUgUUUGCUUUcGUCg -3'
miRNA:   3'- aaAUUAUGUGCUAgAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 104956 0.88 0.808323
Target:  5'- --cAGUACAUGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 53315 0.88 0.808323
Target:  5'- --cAGUACAUGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 53235 0.88 0.808323
Target:  5'- --cAAUACAUGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105407 0.88 0.797973
Target:  5'- cUUUAAUACACGAUCUUUGCUUUc--- -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacag -5'
8569 3' -39.4 NC_002169.1 + 105091 0.89 0.754685
Target:  5'- uUUUAGUACACGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 53123 0.9 0.709059
Target:  5'- --cAGUACAUGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 104767 0.9 0.709059
Target:  5'- --cAAUACAUGAUCUUUGCUUUcGUCa -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 52857 0.91 0.673862
Target:  5'- -cUAGUACAUGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.