Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8569 | 5' | -45.8 | NC_002169.1 | + | 11474 | 0.79 | 0.794696 |
Target: 5'- gUCGAUGAAAGCAAAcAUCaUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105481 | 0.8 | 0.764445 |
Target: 5'- -gGACGAAAGCAAAcAUUGUGUACUu -3' miRNA: 3'- agCUGCUUUCGUUUcUAGCACAUGAu -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119482 | 0.8 | 0.754068 |
Target: 5'- -gGACGAAAGCAAAGAUCGUcUAUg- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCAcAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10551 | 0.8 | 0.743564 |
Target: 5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUcUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 52932 | 0.81 | 0.732944 |
Target: 5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCaCAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10868 | 0.81 | 0.732944 |
Target: 5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCuUUCGUUUCUAGCaCAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 42222 | 0.81 | 0.700511 |
Target: 5'- -gGACGAAAGCAAAGAUUGUGUu--- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAugau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 104869 | 0.82 | 0.667464 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUagGCUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCaCA--UGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 41928 | 0.82 | 0.656365 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUAUg- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCaCAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 42291 | 0.84 | 0.578612 |
Target: 5'- -gGACGAAAGCAAAGAUUGUGUuugACUu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACA---UGAu -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105125 | 0.84 | 0.578612 |
Target: 5'- cUCuACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- -AGcUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 53076 | 0.84 | 0.567612 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10679 | 0.84 | 0.534965 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGUuGUGg-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCA-CAUgau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11204 | 0.84 | 0.534965 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUAUUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 104987 | 0.88 | 0.385047 |
Target: 5'- uUCGAUGAAAGCAAAGAUCaUGUGCg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 53156 | 0.89 | 0.341582 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105115 | 0.89 | 0.341582 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 71670 | 0.89 | 0.317255 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 52698 | 0.89 | 0.317255 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11332 | 0.9 | 0.294256 |
Target: 5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACau---GAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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