miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8569 5' -45.8 NC_002169.1 + 32962 0.66 0.999941
Target:  5'- uUCGACGAAAcgacGCAAAucGGUCaGcGUACUAg -3'
miRNA:   3'- -AGCUGCUUU----CGUUU--CUAG-CaCAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 36267 0.67 0.999862
Target:  5'- aUCGACGcgauacuGCAAAGAcaGUGUGCg- -3'
miRNA:   3'- -AGCUGCuuu----CGUUUCUagCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 37283 0.72 0.982521
Target:  5'- aUCGACG-GAGCAGGGAUCGaUG-ACg- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUAGC-ACaUGau -5'
8569 5' -45.8 NC_002169.1 + 37425 0.67 0.999859
Target:  5'- cCGACGAAGGCcucaccaucgucgGccGAUCGcUGUACa- -3'
miRNA:   3'- aGCUGCUUUCG-------------UuuCUAGC-ACAUGau -5'
8569 5' -45.8 NC_002169.1 + 41105 0.68 0.99962
Target:  5'- cUGACGAuAGUgcGGAUCG-GUGCUc -3'
miRNA:   3'- aGCUGCUuUCGuuUCUAGCaCAUGAu -5'
8569 5' -45.8 NC_002169.1 + 41904 0.75 0.949701
Target:  5'- -gGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCaCAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 41928 0.82 0.656365
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCaCAUGau -5'
8569 5' -45.8 NC_002169.1 + 42031 0.96 0.138699
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 42032 1.01 0.06966
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 42158 0.98 0.113788
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 42222 0.81 0.700511
Target:  5'- -gGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACAugau -5'
8569 5' -45.8 NC_002169.1 + 42291 0.84 0.578612
Target:  5'- -gGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCACA---UGAu -5'
8569 5' -45.8 NC_002169.1 + 42350 0.92 0.239323
Target:  5'- cUCGAUGAAAGCAAAGAUCaUGUACUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 42419 0.93 0.215219
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 43984 0.69 0.998292
Target:  5'- gUCGuCGAAAGUAAAGA-CGUGcACg- -3'
miRNA:   3'- -AGCuGCUUUCGUUUCUaGCACaUGau -5'
8569 5' -45.8 NC_002169.1 + 49163 0.66 0.999968
Target:  5'- aCGACGAuGGCGccGAuaccgauaUUGUGUACa- -3'
miRNA:   3'- aGCUGCUuUCGUuuCU--------AGCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 52698 0.89 0.317255
Target:  5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 52815 0.97 0.131111
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAgCACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 52825 0.92 0.245692
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGCACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 52932 0.81 0.732944
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGCaCAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.