Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8569 | 5' | -45.8 | NC_002169.1 | + | 4197 | 0.68 | 0.99962 |
Target: 5'- gCGGCGGAGGCGAAGGacuuggugaUgGUGUAa-- -3' miRNA: 3'- aGCUGCUUUCGUUUCU---------AgCACAUgau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10551 | 0.8 | 0.743564 |
Target: 5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUcUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10679 | 0.84 | 0.534965 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGUuGUGg-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCA-CAUgau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10741 | 0.97 | 0.131111 |
Target: 5'- uUCGACGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10849 | 0.93 | 0.215219 |
Target: 5'- gUCGAUGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10868 | 0.81 | 0.732944 |
Target: 5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCuUUCGUUUCUAGCaCAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10969 | 0.76 | 0.910977 |
Target: 5'- uUCGACGAAA-CAAAGAUCaUGUAUUAa -3' miRNA: 3'- -AGCUGCUUUcGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10978 | 0.95 | 0.155095 |
Target: 5'- cUCGACGAAAGCAAAcAUCGUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11068 | 0.97 | 0.131111 |
Target: 5'- uUCGACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11096 | 0.95 | 0.163936 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11196 | 0.91 | 0.272578 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCaCAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11204 | 0.84 | 0.534965 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUAUUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11315 | 1.09 | 0.02624 |
Target: 5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11332 | 0.9 | 0.294256 |
Target: 5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACau---GAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11445 | 0.96 | 0.150838 |
Target: 5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11474 | 0.79 | 0.794696 |
Target: 5'- gUCGAUGAAAGCAAAcAUCaUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11602 | 1.01 | 0.06966 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11604 | 0.96 | 0.134856 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11732 | 0.94 | 0.182985 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCaCAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 26639 | 0.72 | 0.986422 |
Target: 5'- cUCGGCGAGGGCAAA-AggGUGUACg- -3' miRNA: 3'- -AGCUGCUUUCGUUUcUagCACAUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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