Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8569 | 5' | -45.8 | NC_002169.1 | + | 105236 | 1.09 | 0.024717 |
Target: 5'- gUCGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11315 | 1.09 | 0.02624 |
Target: 5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119762 | 1.08 | 0.027035 |
Target: 5'- uUCGACGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105255 | 1.05 | 0.042241 |
Target: 5'- uUCGAUGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 71797 | 1.04 | 0.047547 |
Target: 5'- cUCGAUGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 120071 | 1.03 | 0.053501 |
Target: 5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119580 | 1.02 | 0.065705 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 120199 | 1.02 | 0.065705 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11602 | 1.01 | 0.06966 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 42032 | 1.01 | 0.06966 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105660 | 1.01 | 0.076024 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUGu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105532 | 1 | 0.090461 |
Target: 5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 42158 | 0.98 | 0.113788 |
Target: 5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 52815 | 0.97 | 0.131111 |
Target: 5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAgCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11068 | 0.97 | 0.131111 |
Target: 5'- uUCGACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10741 | 0.97 | 0.131111 |
Target: 5'- uUCGACGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11604 | 0.96 | 0.134856 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 42031 | 0.96 | 0.138699 |
Target: 5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 53284 | 0.96 | 0.142642 |
Target: 5'- gUCGACGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105441 | 0.96 | 0.146688 |
Target: 5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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