Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8569 | 5' | -45.8 | NC_002169.1 | + | 42291 | 0.84 | 0.578612 |
Target: 5'- -gGACGAAAGCAAAGAUUGUGUuugACUu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACA---UGAu -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10849 | 0.93 | 0.215219 |
Target: 5'- gUCGAUGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119452 | 0.93 | 0.215219 |
Target: 5'- uUCGAUGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 52698 | 0.89 | 0.317255 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 71670 | 0.89 | 0.317255 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 53156 | 0.89 | 0.341582 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 104987 | 0.88 | 0.385047 |
Target: 5'- uUCGAUGAAAGCAAAGAUCaUGUGCg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11204 | 0.84 | 0.534965 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUAUUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 53076 | 0.84 | 0.567612 |
Target: 5'- -gGACGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119354 | 0.93 | 0.203966 |
Target: 5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -AGCUGcUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 119635 | 0.95 | 0.163936 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105441 | 0.96 | 0.146688 |
Target: 5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGau -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11315 | 1.09 | 0.02624 |
Target: 5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 120071 | 1.03 | 0.053501 |
Target: 5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 42032 | 1.01 | 0.06966 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 105532 | 1 | 0.090461 |
Target: 5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 10741 | 0.97 | 0.131111 |
Target: 5'- uUCGACGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11068 | 0.97 | 0.131111 |
Target: 5'- uUCGACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 52815 | 0.97 | 0.131111 |
Target: 5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAgCACAUGAU- -5' |
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8569 | 5' | -45.8 | NC_002169.1 | + | 11604 | 0.96 | 0.134856 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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